[R] matching genes to a list of gene groups an built binary data frame

[Karim Mezhoud]

Dear All,

I have a gene list
Genes <- c("ACACA", "BAX" , "BCL2", "BID", "BAX", "MAPK9")

and a list of group of genes

ListGroup <- list(group1=c("ACACA" ,"AHSA1"     ,"AIMP2"    , "AKR1B1",
"AKT1",      "AKT1S1"), group2=c("ANXA1"  ,   "AR"   ,     "ARID1A" ,
"ATM"     ,  "BAK1" ,     "BAX"  ), group3=c("BCL2"  ,    "BCL2L1"  ,
"BCL2L11" ,  "BECN1" ,    "BID"  ,     "BIRC2"))

ListGroup
$group1
[1] "ACACA"  "AHSA1"  "AIMP2"  "AKR1B1" "AKT1"   "AKT1S1"
$group2
[1] "ANXA1"  "AR"     "ARID1A" "ATM"    "BAK1"   "BAX"
$group3
[1] "BCL2"    "BCL2L1"  "BCL2L11" "BECN1"   "BID"     "BIRC2"

I would like to built a data frame as:

                   ACACA   BAX  BCL2  BID  BAX   MAPK9
group1            1             0        0          0     0           0
group2            0             1         0          0     1           0
group3            0              0        1           1     0           0

Many thanks,
Karim

	[[alternative HTML version deleted]]