[R] Biomod model access
Matthew Bayly
matt.j.bayly at gmail.com
Wed Feb 12 18:22:13 CET 2014
I have been struggling with this same problem. I always have to re-run.
PLEASE HELP!!
I have however figured out the whole data-format issue & am now able to
save grid files for use in other GIS programs after they are re-exported.
On Thursday, August 15, 2013 1:32:31 AM UTC-7, Jenny Williams wrote:
>
> I am still trying to get my head around biomod2. I have run through the
> tutorial a few times, which works really well in a linear format.
>
> But, I want to see the models and assess them at every part of the
> process. So, I need to:
>
> 1: be able to re-access all the files from /.BIOMOD_DATA/ once R is closed
> and all the file links are lost.
> e.g myBiomodModelOut
>
> 2: call the summary parameters for the models e.g GLM, I can see the files
> but not sure how to access them.
> e.g
> >myGLMs <- BIOMOD_LoadModels(myBiomodModelOut, models='GLM')
> #just produces a list
> >summary(myGLMs[1])
> Length Class Mode
> 1 character character
> #summary(GLM) doesn't work, but is the output that I am looking to find.
>
> 3. find the split datasets used for each of the iterations BIOMOD_Modeling
> options; NbRunEval for DataSplit
>
> Any help or pointers in the right direction would be greatly appreciated.
> FYI the vignette does not seem to work:
> http://127.0.0.1:15505/library/biomod2/doc/index.html
>
>
> ******************
> Jenny Williams
> Spatial Information Scientist, GIS Unit
> Herbarium, Library, Art & Archives Directorate
> Royal Botanic Gardens, Kew
> Richmond, TW9 3AB, UK
>
> Tel: +44 (0)208 332 5277
> email: jenny.w... at kew.org <javascript:><mailto:jenny.williams at kew.org<javascript:>>
>
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