[R] R-help Digest, Vol 121, Issue 5

Tue Mar 5 17:31:41 CET 2013

On R 2.15.2 and ArcGIS 9.3.1, it works for me in ArcCatalog but you have to follow the particulars here:

http://webhelp.esri.com/arcgisdesktop/9.3/index.cfm?TopicName=Accessing_delimited_text_file_data

For example:

write.table(test, '***.tab', sep = '\t', row.names = F)

The extension .tab and sep = '\t' are required for text files.  Didn't test row.names=T but I wouldn't count on that working either.

Jason Law
Statistician
City of Portland, Bureau of Environmental Services
Water Pollution Control Laboratory
6543 N Burlington Avenue
Portland, OR 97203-5452
503-823-1038
jason.law at portlandoregon.gov

-----Original Message-----
Date: Mon, 04 Mar 2013 10:48:39 -0500
From: Duncan Murdoch <murdoch.duncan at gmail.com>
To: Kerry <kernicholson at yahoo.com>
Cc: "r-help at r-project.org" <r-help at r-project.org>
Subject: Re: [R] Mysterious issues with reading text files from R in
	ArcGIS and Excel
Message-ID: <5134C257.6020000 at gmail.com>
Content-Type: text/plain; charset=ISO-8859-1; format=flowed

On 04/03/2013 10:09 AM, Kerry wrote:
> It seems within the last ~3 months Ive been having issues with writing text or csv files from a R data frame.  The problem is multifold and it is hard to filter  out what is going on and where the problem is.  So, Im hoping someone else has come across this and may provide insight.

I think you need to provide a simple example for us to try, either by 
putting a small example of one of your files online for us to download, 
or (better) by giving us self-contained code to duplicate the problem.

You might also get better help (especially about ArcGIS) on the 
R-sig-Geo mailing list: <https://stat.ethz.ch/mailman/listinfo/r-sig-geo>.

Duncan Murdoch

>
>
>
> My current settings for R:
> R version 2.15.2 (2012-10-26)
> Platform: x86_64-w64-mingw32/x64 (64-bit)
> locale:
>
> [1] LC_COLLATE=Swedish_Sweden.1252  LC_CTYPE=Swedish_Sweden.1252    LC_MONETARY=Swedish_Sweden.1252 LC_NUMERIC=C
> [5] LC_TIME=Swedish_Sweden.1252
>
> attached base packages:
> [1] tcltk     stats     graphics  grDevices utils     datasets  methods   base
>
> other attached packages:
> [1] adehabitat_1.8.11 shapefiles_0.6    foreign_0.8-51    tkrplot_0.0-23    ade4_1.5-1
>
> loaded via a namespace (and not attached):
> [1] tools_2.15.2
>
> I am using Microsoft Excel 2010 and ArcGIS 10.1sp1 for Desktop
>
> Basically, no matter what data frame I am working on, when I export it to a text file to be use in Excel or ArcGIS problems arise.  Im not sure if it is R or these other programs, maybe forums for ArcGIS might be more appropriate, but this problem only occurs when I use tables that have been produced from an R session.
>
> When I try to open a text file in Excel, either I get an error message stating
> The file you are trying to open is in a different format than specified by the file extension.  Verify that the file is not corrupted and is from a trusted source.
> Followed by
> Excel has detected that 'file.txt' is a SYLK file, but cannot load it.  Either the file has errors or is not a SYLK file format.  Click OK to open the file in a different format
> Then the file opens
>
>
> Otherwise, the file opens "fine" the first time through - and "looks" ok. I can't figure out what Im doing different between the two commands of write.table as they are always written the same:
> write.csv(file, file = "D:/mylocations/fileofinterest.csv") or write.table(file, file = "D:/mylocations/fileofinterest.txt")
> Sometimes I will try to add sep = "," or sep = ";" but these don't make a difference (which I didn't figure they would).
>
> The other program I use is ArcGIS and bringing in a txt file from R is really messing things up as 2 new columns of information are typically added and date/time data is usually lost with txt files, but not with csv files.
>
> For instance - a text file that looks like this in Excel:
>      id       x       y                date    R1dmed    R1dmean R1error R2error
> 1 F07001 1482445 6621768 2007-03-05 10:00:53 2498.2973 2498.2973   FALSE   FALSE
> 2 F07001 1481274 6619628 2007-03-05 12:00:41  657.1029  657.1029    FALSE   FALSE
> 3 F07001 1481279 6619630 2007-03-05 14:01:12  660.3569  660.3569    FALSE   FALSE
> 4 F07001 1481271 6619700 2007-03-05 16:00:39  620.1397  620.1397    FALSE   FALSE
>
>   in ArcGIS now looks like this:
>
> Field1idid_Xid_YxydateR1dmedR1dmean R1errorR2errorOBJECTID *
> 1F07001118.0818119.485541e+01514824456621768NA2498.297272498.29727FALSEFALSE1
> 2F07001118.0818119.485541e+01514812746619628NA657.102922657.102922FALSEFALSE2
> 3F07001118.0818119.485541e+01514812796619630NA660.356911660.356911FALSEFALSE3
> 4F07001118.0818119.485541e+01514812716619700NA620.139702620.139702FALSEFALSE4
> 5F07001118.0818119.485541e+01514808496620321NA378.186792378.186792FALSEFALSE5
>
> Where did id_X and id_Y come from?? What are they??
> What happened to the Date column???  Why does the date column show up when I use write.csv but not write.table?
>
> Thank you for your help.
>
> ~K
> 	[[alternative HTML version deleted]]
>
>
>
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