[R] PCA and gglot2

[ashz]

Hi,

Thanks to ssefick for the ggbiplot tip.

It works fine so I submit a general script thats works for future users.

library(ggbiplot)
data<-read.csv("C:/…/MyPCA.csv") 
data1<-data[,1:4] 
my.pca <- prcomp(data1, scale. = TRUE)
my.class<- data$Group  
g <- ggbiplot(my.pca, obs.scale = 1, var.scale = 1,groups = my.class,
ellipse = TRUE, circle = TRUE)
g <- g + scale_color_discrete(name = '')
g <- g + theme(legend.direction = 'horizontal', 
               legend.position = 'top')
print(g)

BTW
Installation:
library(devtools)
install_github("ggbiplot", "vqv")

you will need to instal before Rtools
(http://cran.r-project.org/bin/windows/Rtools/)

Thanks a lot for the help.




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