[R] NA/NaN/Inf in foreign function call (arg 6) error from coxph function
Cindy Yao
cindyyao0301 at gmail.com
Wed Feb 13 16:46:12 CET 2013
Dear R-helpers:
I am trying to fit a multivariate Cox proportional hazards model,
modelling survival outcome as a function of treatment and receptor
status. The data look like below:
# structure of the data
str(sample.data)
List of 4
$ survobj : Surv [1:129, 1:2] 0.8925+ 1.8836+ 2.1191+ 5.3744+
1.6099+ 5.2567 0.2081+ 0.2108+ 0.2683+ 0.4873+ ...
..- attr(*, "dimnames")=List of 2
.. ..$ : NULL
.. ..$ : chr [1:2] "time" "status"
..- attr(*, "type")= chr "right"
$ therapy : Factor w/ 2 levels "treatment1","treatment2": 1 1 1 1 1
1 1 2 2 1 ...
$ ReceptorA: Factor w/ 2 levels "0","1": 1 2 2 2 1 2 2 2 2 1 ...
$ ReceptorB: Factor w/ 2 levels "0","1": 1 2 1 1 2 1 1 1 1 1 ...
But when I tried to fit a multivariate Cox proportional model, I got
the following error. I'm not quite what that means. Any help would be
much appreciated!
# perform multivariate Cox proportional hazards model
coxph(sample.data$survobj ~ sample.data$therapy +
sample.data$ReceptorA + sample.data$ReceptorB)
Error in fitter(X, Y, strats, offset, init, control, weights = weights, :
NA/NaN/Inf in foreign function call (arg 6)
In addition: Warning message:
In fitter(X, Y, strats, offset, init, control, weights = weights, :
Ran out of iterations and did not converge
Best regards,
Cindy
-- output of sessionInfo():
sessionInfo()
R version 2.15.2 (2012-10-26)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] C
attached base packages:
[1] grid splines stats graphics grDevices datasets utils
[8] methods base
other attached packages:
[1] MASS_7.3-23
[2] hexbin_1.26.1
[3] cluster_1.14.3
[4] latticeExtra_0.6-24
[5] RColorBrewer_1.0-5
[6] lattice_0.20-13
[7] survival_2.37-2
loaded via a namespace (and not attached):
[1] tools_2.15.2
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