[R] Rmpi installs before R-3.0.0 but not since
Patrick Connolly
p_connolly at slingshot.co.nz
Tue Aug 13 11:36:18 CEST 2013
With R-3.0.1
Loading required package: Rmpi
Failed with error: ‘package ‘Rmpi’ was built before R 3.0.0: please re-install it’
And when I try to reinstall Rmpi, I get this
<after a whole bunch of 'yes's>
....
checking mpi.h usability... no
checking mpi.h presence... no
checking for mpi.h... no
configure: error: "Cannot find mpi.h header file"
ERROR: configuration failed for package ‘Rmpi’
And attempting to go back....
With R-2.15.3, I get these warnings:
Warning messages:
1: package ‘gbm’ was built under R version 3.0.1
2: package ‘survival’ was built under R version 3.0.1
[1] "Error in socketConnection(\"localhost\", port = port, server = TRUE, blocking = TRUE, : \n cannot open the connection\n"
So there's no going back.
Where do I look for reasons why Rmpi can't find mpi.h header even
though it was findable before 3.0.1? I know not to take that message
too literally since there is a file mpi.h that bash can find.
Something else is being hinted at but what?
> sessionInfo()
R version 3.0.1 (2013-05-16)
Platform: x86_64-unknown-linux-gnu (64-bit)
locale:
[1] LC_CTYPE=en_NZ.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_NZ.UTF-8 LC_COLLATE=en_NZ.UTF-8
[5] LC_MONETARY=en_NZ.UTF-8 LC_MESSAGES=en_NZ.UTF-8
[7] LC_PAPER=C LC_NAME=C
[9] LC_ADDRESS=C LC_TELEPHONE=C
[11] LC_MEASUREMENT=en_NZ.UTF-8 LC_IDENTIFICATION=C
attached base packages:
[1] parallel splines grDevices utils stats graphics methods
[8] base
other attached packages:
[1] gbm_2.1 survival_2.37-4 cairoDevice_2.19 lattice_0.20-15
loaded via a namespace (and not attached):
[1] grid_3.0.1 multicore_0.1-7
>
TIA
--
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
___ Patrick Connolly
{~._.~} Great minds discuss ideas
_( Y )_ Average minds discuss events
(:_~*~_:) Small minds discuss people
(_)-(_) ..... Eleanor Roosevelt
~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.~.
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