[R] NAMESPACE and imports

Jeff Newmiller jdnewmil at dcn.davis.CA.us
Mon Apr 22 04:05:58 CEST 2013 

Please don't hijack a thread... start a new one with a new subject.
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Sent from my phone. Please excuse my brevity.

Santosh <santosh2005 at gmail.com> wrote:

>Dear Rxperts,
>I am trying to use pdflatex from Hmisc, I get the error message.
>"pdflatex
>is not available"... The version of R is
>> version
>
>platform       i386-w64-mingw32
>arch           i386
>os             mingw32
>system         i386, mingw32
>status
>major          2
>minor          15.2
>year           2012
>month          10
>day            26
>svn rev        61015
>language       R
>version.string R version 2.15.2 (2012-10-26)
>nickname       Trick or Treat
>>
>
>Is it not available anymore? I created a latex file using "tables"
>package
>and am unable to create the pdf file ...
>
>Any suggestions welcome!
>Thanks,
>Santosh
>
>
>On Fri, Apr 19, 2013 at 11:30 AM, Prof Brian Ripley
><ripley at stats.ox.ac.uk>wrote:
>
>> On 19/04/2013 19:16, Frank Harrell wrote:
>>
>>> Now I see it.  S3method() wants two arguments so I need to create
>multiple
>>> S3method() statements for each generic.
>>>
>>
>> Sort of.  It actually accepts two or three arguments: see package
>'tools'
>> for an example of using three.
>>
>>
>>  Frank
>>>
>>> Frank Harrell wrote
>>>
>>>> Right, I should have said import(Hmisc) instead of
>importFrom(Hmisc), but
>>>> that does not explain the error message.
>>>> Blaser Nello wrote
>>>>
>>>>> Not sure this fixes your problem, but as far as I can know (and
>can tell
>>>>> from the manual:
>>>>>
>http://cran.r-project.org/doc/**manuals/r-release/R-exts.pdf<http://cran.r-project.org/doc/manuals/r-release/R-exts.pdf>),
>>>>> importFrom
>>>>> needs to know what functions you are importing [e.g.
>importFrom(Hmisc,
>>>>> "latex") importFrom(stats, "anova")].
>>>>>
>>>>>
>>>>> -----Original Message-----
>>>>> From:
>>>>>
>>>>
>>>  r-help-bounces@
>>>>>
>>>>
>>>    [mailto:
>>>>>
>>>>
>>>  r-help-bounces@
>>>>>
>>>>
>>>  ] On Behalf Of Frank Harrell
>>>>> Sent: Freitag, 19. April 2013 16:26
>>>>> To:
>>>>>
>>>>
>>>  r-help@
>>>>>
>>>>
>>>  Subject: [R] NAMESPACE and imports
>>>>>
>>>>> I am cleaning up the rms package to not export functions not to be
>>>>> called
>>>>> directly by users.  rms uses generic functions defined in other
>>>>> packages.
>>>>> For example there is a latex method in the Hmisc package, and rms
>has a
>>>>> latex method for objects of class "anova.rms" so there are
>anova.rms and
>>>>> latex.anova.rms functions in rms.  I use:
>>>>>
>>>>> export(asis,bj,bjplot,bootBCa,**bootcov,bootplot,bplot,**
>>>>> calibrate,cph,catg,**combineRelatedPredictors,**
>>>>> confplot,contrast,coxphFit,**cph,cr.setup,datadist,**
>>>>> effective.df,fastbw,formatNP,**gendata,gIndex,GiniMd,Glm,Gls,**
>>>>> groupkm,Hazard,hazard.ratio.**plot,histdensity,"%ia%",ie.**
>>>>> setup,interactions.containing,**legend.nomabbrev,lm.pfit,lrm,**
>>>>> lrtest,lsp,matinv,matrx,**Newlabels,Newlevels,nomogram,**
>>>>> num.intercepts,ols,ols.**influence,oos.loglik,pantext,**
>>>>> Penalty.matrix,Penalty.setup,**pentrace,perimeter,perlcode,**
>>>>> plot.xmean.ordinaly,pol,pphsm,**predab.resample,Predict,psm,**
>>>>> rcs,related.predictors,**reVector,robcov,Rq,sascode,**
>>>>> scored,sensuc,setPb,show.**influence,specs,strat,Surv,"[.**
>>>>> Surv",survdiffplot,survest,**Survival,survplot,univarLR,**
>>>>> validate,val.prob,val.probg,**val.surv,vif,which.influence)
>>>>>
>>>>> importFrom(Hmisc)
>>>>> S3method(anova, rms)
>>>>> S3method(latex, anova.rms, bj, cph, Glm, Gls, lrm, naprint.delete,
>ols,
>>>>> pphsm, psm, rms, Rq, summary.rms, validate)
>>>>>
>>>>> When doing R CMD INSTALL I get: [using R 2.15.3]
>>>>>
>>>>> ** preparing package for lazy loading
>>>>> Error : c("bad 'S3method' directive: S3method(latex, anova.rms,
>bj, cph,
>>>>> Glm, Gls, lrm, naprint.delete, ", "bad 'S3method' directive:    
>ols,
>>>>> pphsm,
>>>>> psm, rms, Rq, summary.rms, validate)")
>>>>> ERROR: lazy loading failed for package �rms�
>>>>>
>>>>> Any advice appreciated.
>>>>> Frank
>>>>>
>>>>>
>>>>>
>>>>>
>>>>> -----
>>>>> Frank Harrell
>>>>> Department of Biostatistics, Vanderbilt University
>>>>> --
>>>>> View this message in context:
>>>>>
>http://r.789695.n4.nabble.com/**NAMESPACE-and-imports-**tp4664718.html<http://r.789695.n4.nabble.com/NAMESPACE-and-imports-tp4664718.html>
>>>>> Sent from the R help mailing list archive at Nabble.com.
>>>>>
>>>>> ______________________________**________________
>>>>>
>>>>
>>>  R-help@
>>>>>
>>>>
>>>    mailing list
>>>>>
>https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>>>>> PLEASE do read the posting guide
>>>>>
>http://www.R-project.org/**posting-guide.html<http://www.R-project.org/posting-guide.html>
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>> ______________________________**________________
>>>>>
>>>>
>>>  R-help@
>>>>>
>>>>
>>>    mailing list
>>>>>
>https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>>>>> PLEASE do read the posting guide
>>>>>
>http://www.R-project.org/**posting-guide.html<http://www.R-project.org/posting-guide.html>
>>>>> and provide commented, minimal, self-contained, reproducible code.
>>>>>
>>>>
>>>
>>>
>>>
>>>
>>> -----
>>> Frank Harrell
>>> Department of Biostatistics, Vanderbilt University
>>> --
>>> View this message in context: http://r.789695.n4.nabble.com/**
>>>
>NAMESPACE-and-imports-**tp4664718p4664744.html<http://r.789695.n4.nabble.com/NAMESPACE-and-imports-tp4664718p4664744.html>
>>> Sent from the R help mailing list archive at Nabble.com.
>>>
>>> ______________________________**________________
>>> R-help at r-project.org mailing list
>>>
>https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>>> PLEASE do read the posting guide http://www.R-project.org/**
>>> posting-guide.html <http://www.R-project.org/posting-guide.html>
>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>>
>>
>> --
>> Brian D. Ripley,                  ripley at stats.ox.ac.uk
>> Professor of Applied Statistics, 
>http://www.stats.ox.ac.uk/~**ripley/<http://www.stats.ox.ac.uk/~ripley/>
>> University of Oxford,             Tel:  +44 1865 272861 (self)
>> 1 South Parks Road,                     +44 1865 272866 (PA)
>> Oxford OX1 3TG, UK                Fax:  +44 1865 272595
>>
>>
>> ______________________________**________________
>> R-help at r-project.org mailing list
>>
>https://stat.ethz.ch/mailman/**listinfo/r-help<https://stat.ethz.ch/mailman/listinfo/r-help>
>> PLEASE do read the posting guide http://www.R-project.org/**
>> posting-guide.html <http://www.R-project.org/posting-guide.html>
>> and provide commented, minimal, self-contained, reproducible code.
>>
>
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>
>
>
>------------------------------------------------------------------------
>
>______________________________________________
>R-help at r-project.org mailing list
>https://stat.ethz.ch/mailman/listinfo/r-help
>PLEASE do read the posting guide
>http://www.R-project.org/posting-guide.html
>and provide commented, minimal, self-contained, reproducible code.

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