[R] Sequence analysis

ben1983 ben_thompson at talk21.com
Fri Apr 19 13:21:06 CEST 2013

            I am trying to look at the similarities between a number of
sequences, for example i am trying to see how similar "ababbbassdaa" is to
"addffggssbbsbbs" I was wondering is the some way for me to see how similar
they are in terms of, for example, number of a's, number of b's, how often a
and ab are consecutive, how often abab is together etc.
Any advice would be really useful......any kind of shove in the right
direction would be amazing! I've tried doing basic alignments but i think
this is loosing quite a lot of information.
Many thanks,

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