[R] Full Documentation of R analysis
murdoch.duncan at gmail.com
Thu Apr 4 16:28:02 CEST 2013
On 04/04/2013 10:18 AM, will.eagle at gmx.net wrote:
> Dear all,
> I would like to fully document an analysis in R including script, output and
> workspace data. To do this I currently run under Linux
> $ R CMD BATCH myscript.R
> This command combines and saves only the script commands and the output
> ./myscript.Rout. To save the workspace, I have to explicitly specify the
> path in the R file and apply save.image(...).
> How can I save the full workspace with the same naming scheme under the same
> path, e.g. ./myscript.RData similar to ./myscript.Rout?
> Note: R CMD BATCH myscript.R --save does not work.
By default, R CMD BATCH runs R with --save, so it will save the image in
the usual default place.
You can use commandArgs() in your script to find the name of the script,
and construct a save image filename from that if you want to save
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