[R] rgl package broke with R 2.14.2

[Duncan Murdoch]

On 12-03-27 6:31 PM, Grimes Mark wrote:
> Dear People
>
>    I can't figure out how to fix this problem: rgl won't run under R
> 2.14.2 (it was working for me before under 2.14.0). The error message
> is:

rgl is currently changing fairly rapidly.  I'd suggest trying to install 
again (the current version, as of yesterday, is 0.92.861).  If that's 
not enough, I'd install a binary build (which may be a little old, but 
at least it built successfully...).

Duncan Murdoch

>
>   >  library(rgl)
> Error : .onLoad failed in loadNamespace() for 'rgl', details:
>     call: dyn.load(file, DLLpath = DLLpath, ...)
>     error: unable to load shared object '/Library/Frameworks/
> R.framework/Versions/2.14/Resources/library/rgl/libs/x86_64/aglrgl.so':
>     dlopen(/Library/Frameworks/R.framework/Versions/2.14/Resources/
> library/rgl/libs/x86_64/aglrgl.so, 6): Symbol not found:
> __ZN3gui13OSXGUIFactory12hasEventLoopEv
>     Referenced from: /Library/Frameworks/R.framework/Versions/2.14/
> Resources/library/rgl/libs/x86_64/aglrgl.so
>     Expected in: dynamic lookup
>
> Error: package/namespace load failed for ‘rgl’
>
> I tried re-installing the package several ways, including from R, both
> binary and type='source', and from Terminal using R CMD INSTALL
> rgl_0.92.858.tar.
>
> I found some threads with this error but no solutions that I could
> understand.  I am an R user, not a developer.  Do you have any idea
> how to fix this?
>
> Thanks for your help,
>
> Mark
>
>   >  sessionInfo()
> R version 2.14.2 (2012-02-29)
> Platform: x86_64-apple-darwin9.8.0/x86_64 (64-bit)
>
> locale:
> [1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
>
> attached base packages:
> [1] splines   stats     graphics  grDevices utils     datasets
> methods   base
>
> other attached packages:
>    [1] bio3d_1.1-3           RCytoscape_1.4.4
> XMLRPC_0.2-4          graph_1.32.0          org.Hs.eg.db_2.6.4
>    [6] RSQLite_0.11.1        DBI_0.2-5
> AnnotationDbi_1.16.19 Biobase_2.14.0        adegenet_1.3-4
> [11] ade4_1.4-17           MASS_7.3-17           cluster_1.14.2
> Hmisc_3.9-2           survival_2.36-12
> [16] plyr_1.7.1
>
> loaded via a namespace (and not attached):
> [1] grid_2.14.2    IRanges_1.12.6 lattice_0.20-6 RCurl_1.91-1
> tools_2.14.2   XML_3.9-4
>
>
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