[R] substituting XML tags with custom values
filip
fbielejec at gmail.com
Thu Mar 22 20:41:47 CET 2012
Hello,
I have an xml document with a following element:
<sequence id = "ancestralSequence">
<taxon id="test">
</taxon>
ACAGTTGACACCCTT
</sequence>
I would like to parse a new sequence of characters inside the "taxon"
tags. I started looking into XML package documentation, but cannot find
a simple solution yet. My code:
# load packages
require("XML")
# create a new sequence
newSeq <- "TGTCAATGGAACCTG"
# read the xml
xml <- xmlParse("epoch_mcmc.xml")
# save as character:
charXML <- saveXML(xml)
--
while(!suceed) { try(); }
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