[R] Error in prune in the rEMM package

vioravis vioravis at gmail.com
Thu Mar 15 09:24:08 CET 2012


I am trying to use rEMM package for the Extensible Markov Models. I tried the
following sequence of code:

emmt=EMM(measure="euclidean",threshold=0.75,lambda=0.001)
emmt=build(emmt,data)
new_threshold=sum(cluster_counts(emmt))*0.002
emmt_ new=prune(emmt,new_threshold)

However, I get the following error when I run the last line of the code:

Error in remove_clusters(x, rare_clusters(x, count_threshold =
count_threshold)) : 
  (subscript) logical subscript too long
In addition: Warning message:
In smc_removeState(x at tracds_d$mm, to_remove) :
  State 72103254328333338344346362367369370376377390412425440445483489499
does not exist!
 
I am unable to provide the data that I used since it is confidential. It
would be great if someone can still help with the issue???

Thank you.

Ravi



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