[R] ordered lable in ROCR
genomenet at gmail.com
genomenet at gmail.com
Thu Mar 1 06:54:16 CET 2012
Hi There,
I don't understand how to order the label in ROCR package in order to
get the correct result. I am wondering whether you can help me.
library(ROCR)
data(ROCR.simple)
pred <- prediction(ROCR.simple$predictions,ROCR.simple$labels)
svm.auc <- performance(pred, 'tpr', 'fpr')
plot(svm.auc)
#####label
ROCR.simple$labels[ROCR.simple$labels=="0"]="tumor"
ROCR.simple$labels[ROCR.simple$labels==1]="normal"
pred <- prediction(ROCR.simple$predictions,ROCR.simple$labels)
svm.auc <- performance(pred, 'tpr', 'fpr')
plot(svm.auc)
The ROC curve is flipped. How do we know which order of labels we should choose?
Is this a bug of ROC?
thank you very much.
Mike
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