[R] predicting expected number of events using a coxph model
agittens
swiftset at gmail.com
Fri Jun 29 23:56:45 CEST 2012
I fit a coxph model:
coxphfit <- coxph(Surv(sampledLifetime, !sampledCensoredQ) ~ curpbc6 +
prevpbc6, sampledTimeSeries)
Now I'm trying to predict the expected number of events using a new dataset.
The documentation suggests that
coxPred <- predict(coxphfit, newdata = testTimeSeries, type="expected")
will do what I want, but I get the error
Error in model.frame.default(data = testTimeSeries, formula =
Surv(sampledLifetime, :
variable lengths differ (found for 'curpbc6')
when I do this. The dataframes sampledTimeSeries and testTimeSeries were
constructed by taking rows from a larger dataframe, so they have the same
data.
What am I doing incorrectly?
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