[R] load coda in BRugs to perfor diagnostics

[Uwe Ligges]

On 05.06.2012 18:30, Guillaume2883 wrote:
> Dear all,
>
> I just wrote a script to have each of my three mcmc chins running on a
> different computer core to improve computation speed. To do it I use the
> function sfLapply from the package snowfall.
> Before using parallell computation, I did my diagnostic analyses just after
> the model updating, but now I have to save the coda before.
> Using the CODA package, it is possible to load the outputs in a mcmc.list to
> perform some diagnostics but it doesn't work with functions from the BRugs
> package such as samplesBgr.
> Can you explain what should I do to read coda files with BRugs ?

You cannot.

BRugs runs OpenBUGS in the background and is just an interface plus some 
sugar for OpenBUGS. Functions such as samplesBgr() get the data of the 
current sampling state from OpenBUGS.

Best,
Uwe Ligges


>
> Thanking you in advance
>
> Guillaume
>
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