[R] problems with glht for ancova
gaiarrido
gaiarrido at usal.es
Wed Jan 11 10:42:32 CET 2012
I've run an ancova, edadysexo is a factor with 3 levels,and log(lcc) is the
covariate (continous variable)
I get this results
> ancova<-aov(log(peso)~edadysexo*log(lcc))
> summary(ancova)
Df Sum Sq Mean Sq F value Pr(>F)
edadysexo 2 31.859 15.9294 803.9843 <2e-16 ***
log(lcc) 1 11.389 11.3887 574.8081 <2e-16 ***
edadysexo:log(lcc) 2 0.063 0.0317 1.6021 0.2025
Residuals 509 10.085 0.0198
Then, I tried to do a post-hoc using glht from multcomp package, but,
because the interaction it's not siginificant i did it just for the factor
> summary(glht(ancova, linfct=mcp(edadysexo="Tukey")))
Simultaneous Tests for General Linear Hypotheses
Multiple Comparisons of Means: Tukey Contrasts
Fit: aov(formula = log(peso) ~ edadysexo * log(lcc))
Linear Hypotheses:
Estimate Std. Error t value Pr(>|t|)
M - H == 0 -1.8218 1.1111 -1.640 0.230
SUB - H == 0 -0.9298 1.1957 -0.778 0.717
SUB - M == 0 0.8921 1.1130 0.801 0.702
(Adjusted p values reported -- single-step method)
Mensajes de aviso perdidos
In mcp2matrix(model, linfct = linfct) :
covariate interactions found -- default contrast might be inappropriate
Two question:
1) Why I don't get differences in edadysexo when i got it in the ancova
2) About the warning message. Why R said "covariate interactions found" of i
didn't get it in the ancova
Next, i tried to made glht with the interaction, but, obviously, i got an
error because Tukey just work with factors.
> summary(glht(ancova, linfct=mcp(edadysexo*log(lcc)="Tukey")))
Error: inesperado '=' en "summary(glht(ancova,
linfct=mcp(edadysexo*log(lcc)="
What should i do?
Thanks in advance
-----
Mario Garrido Escudero
PhD student
Dpto. de Biología Animal, Ecología, Parasitología, Edafología y Qca. Agrícola
Universidad de Salamanca
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