# [R] (subscript) logical subscript too long in using apply

Petr PIKAL petr.pikal at precheza.cz
Fri Feb 17 13:24:22 CET 2012

```Hi

apply probably does not understand you function. I do not want to go too
deeply into it but I noticed few issues in it. See inline

>
> Dear ALL
> I have this function in R:
>
>
>
> func_LN <- function(data){
>
> med_ge <- matrix(c(rep(NA,nrow(data)*ncol(data))), nrow = nrow(data),
> ncol=ncol(data), byrow=TRUE)
> T <- matrix(c(rep(NA,length(n)*ncol(data))), nrow = length(n),
> ncol=ncol(data), byrow=TRUE)
> Tdiff<- matrix(c(rep(NA,length(n)*ncol(data))), nrow = length(n),
> ncol=ncol(data), byrow=TRUE)
> T1<- c(rep(NA,ncol(data)))
> T0<- c(rep(NA,ncol(data)))
> cov_rank<-matrix(c(rep(NA,ncol(data)*ncol(data))), nrow = ncol(data),
ncol
> = ncol(data) , byrow=TRUE)
>
> med <- c(rep(NA,ncol(data)))
> mean_ge <- c(rep(NA,ncol(data)))
> n<-c(NA,2)
>   if (ncol(data)>1){
>     for(m_j in 1:ncol(data)){
>       med[m_j]<-median(data[,m_j])}

this shall be the same as
med <- apply(data, 2, median)

>
>
>     for(m_j in 1:ncol(data))
>       for(m_i in 1:nrow(data))
>       {
>         if(data[m_i,m_j]>med[m_j])
>           med_ge[m_i,m_j]=0
>         else
>           med_ge[m_i,m_j]=1
>       }

AFAIK this shall be same as

med_ge<-(sweep(dat, 2, med)<=0)*1

>
>     y=c(1,1,1,1,1,1,0,0,0,0)
>
>
>     n<-c(sum(y == 1),sum(y==0))
>     touse3 <- y==1
>
>     T1<- apply(med_ge[touse3,], 2, mean)
>     T0<- apply(med_ge[!touse3,], 2, mean)
>
>
>     T=rbind(T1,T0)
>     Tbar=colMeans(T)
>     Tdiff=T-Tbar
>     cov_rank=cov(med_ge)
>     inv_cov_rank=ginv(cov_rank)
>
>     LN=0
>     for(m_i in 1:length(n)) {
>       LN <-  LN+((Tdiff[m_i,]%*%inv_cov_rank)%*%t(Tdiff)[,m_i])*n[m_i]
>
>     }
>     return(LN)
>   }}
>
> func_LN(data)
>
> Now, I want to try this function on subgroups of data.
> So I used "apply"
>  result <- apply(gs , 1 , function(z) func_LN(data[which(z==1),]))
>
> but I saw this error:
>
> Error in apply(med_ge[touse3, ], 2, mean) :
>   (subscript) logical subscript too long

The rest is quite complicated for me so I do not dig into it. The obvious
source of error is
apply(med_ge[touse3, ], 2, mean)

which tells you that touse3 is longer than number of med_ge rows.

The error message probably could not be more precise.

Regards
Petr

>
> I will appreciate if you help me.
>
> PS:the elements of gs are 1 0r 0.
> dim(data)=24*2665
> dim(gs)=107*2665
>
> Soheila
>
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>
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