[R] R Package "example" section of .Rd file question (think it's a non-ASCII issue, but not sure...)
Martin Morgan
mtmorgan at fhcrc.org
Wed Feb 15 22:20:12 CET 2012
On 02/15/2012 12:18 PM, Ben Ganzfried wrote:
> Hey,
>
> I keep getting the following warning:
>
>> data(GSE19829-GPL570_eset)
> Warning in data(GSE19829 - GPL570_eset) :
> data set ‘GSE19829 - GPL570_eset’ not found
>> ## maybe str(GSE19829-GPL570_eset) ; plot(GSE19829-GPL570_eset) ...
Hi Ben --
'-' is being parsed as a minus sign; you could (I think) quote it
`GSE19829-GPL570_eset`
or better come up with a legal name.
Martin
>>
>> if(require(affy)){
> + summary(GSE19829-GPL570_eset$vital_status)
> + }
> Error in summary(GSE19829 - GPL570_eset$vital_status) :
> object 'GSE19829' not found
> Execution halted
>
> This error does not happen on other of my other .Rd files. None of the
> other .Rd files have a "-" character in their title. for example, the
> other files have the following:
>> data(GSE1234)
> OR
>> data(GSE5678)
>
> I think the issue is the "-" character, but I'm not sure. Does anyone know
> if this is the case? And if so, how do I fix it? If not, any other
> suggestions?
>
> Much thanks!
>
> Ben
>
> [[alternative HTML version deleted]]
>
>
>
>
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