[R] Identifying and Removing NA Columns and factor Columns with more than x Levels

[Lopez, Dan]

Hi Bert,

Thanks! These worked perfectly.

mydata<-mydata[,!(i1)]

Dan

-----Original Message-----
From: Bert Gunter [mailto:gunter.berton at gene.com] 
Sent: Thursday, August 30, 2012 8:54 AM
To: Lopez, Dan
Cc: R help (r-help at r-project.org)
Subject: Re: [R] Identifying and Removing NA Columns and factor Columns with more than x Levels

If d is your data frame

i1 <- sapply(d,function(x)is.factor(x)&&length(levels(x))>31)
## a vector of length ncol(d) that is TRUE only for factor columns with >31 levels

i2 >- sapply(d,function(x)any(is.na(x)))
## You can figure it out.

-- Bert

On Thu, Aug 30, 2012 at 8:38 AM, Lopez, Dan <lopez235 at llnl.gov> wrote:
> Hi,
>
> How do you subset a dataframe so that you only have columns:
>
> 1.       that contain one or more NAs?
>
> 2.       that contain factors with greater than or equal to 32 levels?
>
> How do you remove from a dataframe columns**
>
> 3.       with one or more NA's?
>
> 4.       that contain factors with greater than or equal to 32 levels?
>
> ** I know how to remove columns at a basic level but I am trying to figure out a more efficient way of performing these particular tasks (my data set has 60 columns).
> For NA's I essentially used summary(mtcars) and manually made a note of where NA's appeared than used:
> mtcars1<-mtcars1[,!(names(mtcars1)%in% c("hp","wt","vs"))] I did 
> something similar for factors with greater than x levels only I used str(mtcars) to help me identify them.
> BTW I know mtcars doesn't have any of these issues. I just used it as a quick reference.
>
>
> Dan
>
>
>         [[alternative HTML version deleted]]
>
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-- 

Bert Gunter
Genentech Nonclinical Biostatistics

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