[R] how to read .bam file

[Rui Barradas]

Hello,

#install.packages('sos')  # do this,
library(sos)   # it would have saved you hours.

r1 <- findFn('sam')
r2 <- findFn('bam')

r1 & r2

Number one. Genomic alignment file formats.

Hope this helps,

Rui Barradas

Em 10-08-2012 11:10, peter dalgaard escreveu:
> On Aug 10, 2012, at 08:24 , mengxin wrote:
>
>> Hi all:
>> I've got a data of ".bam" which is created from my partner under linux sysyem.
>> My system is window xp, and I wanna know how to read the .bam file.
>>
> An what is the .bam file supposed to contain? You are really not giving us much of a clue, are you?
>
> I'd venture a guess that it is something with genomic alignment files, in which case you need to see the Bioconductor folks over on their mailing lists. However, it could be a multitude of other things, like "Bob's Adlib Music" of "Bravo Archived Media"...
>