[R] wgcna choice for softpower by scale indepence when combining to datasets

[Ingezz]

Dear Peter,

I have another question about WGCNA. I am using the package for
meta-analysis to find modules preserved in several datasets. However, I am
unsure how to handle the softpower, because each dataset has its own ideal
scale indepence value. When combining several datasets what should I do? 
- pick the lowest scale indepence value and use this for all datasets? 
- calculate an average scale indepence value of the datasets, and use this
one? 
- use different scale indepence values for different datasets, all though
combining them later on? 
- or something else, which I havent thought of? 

Hope you can help me! 

Many thanks! 

Kind regards,
Inge



--
View this message in context: http://r.789695.n4.nabble.com/wgcna-tp3649354p4638677.html
Sent from the R help mailing list archive at Nabble.com.