[R] CRAN (and crantastic) updates this week
Crantastic
cranatic at gmail.com
Mon Apr 30 00:40:05 CEST 2012
CRAN (and crantastic) updates this week
New packages
------------
* anoint (1.0)
Maintainer: S. A. Kovalchik
Author(s): Ravi Varadhan <rvaradhan at jhmi.edu> and Stephanie Kovalchik
License: GPL (>= 2)
http://crantastic.org/packages/anoint
Tools for assessing multiple treatment-covariate interactions with
data from a parallel-group randomized controlled clinical trial
* BINCO (0.1-1)
Maintainer: Shuang Li
Author(s): Shuang Li <shuangli at fhcrc.org>,Li Hsu <lih at fhcrc.org>, Jie Peng
<jiepeng at ucdavis.edu>, Pei Wang <pwang at fhcrc.org>,
License: GPL (>= 2)
http://crantastic.org/packages/BINCO
Network construction based on inference on edge selection frequencies
generated from bootstrap resamples
* binomlogit (1.0)
Maintainer: Agnes Fussl
Author(s): Agnes Fussl
License: GPL-3
http://crantastic.org/packages/binomlogit
The R package contains different MCMC schemes to estimate the
regression coefficients of a binomial (or binary) logit model within
a Bayesian framework: a data-augmented independence MH-sampler, an
auxiliary mixture sampler and a hybrid auxiliary mixture (HAM)
sampler. All sampling procedures are based on algorithms using data
augmentation, where the regression coefficients are estimated by
rewriting the logit model as a latent variable model called
difference random utility model (dRUM).
* biwavelet (0.1)
Maintainer: Tarik C. Gouhier
Author(s): Tarik C. Gouhier, Aslak Grinsted
License: GPL (>= 2)
http://crantastic.org/packages/biwavelet
This is a port of the WTC MATLAB package written by Aslak Grinsted and
the wavelet program written by Christopher Torrence and Gibert P.
Compo. This package can be used to perform univariate and bivariate
(cross-wavelet, wavelet coherence) wavelet analyses.
* CePa (0.1)
Maintainer: Zuguang Gu
Author(s): Zuguang Gu
License: GPL (>= 2)
http://crantastic.org/packages/CePa
Use pathway topology information to assign weight to pathway nodes.
* fracprolif (1.0.2)
Maintainer: Shawn Garbett
Author(s): Shawn Garbett, Darren Tyson
License: GPL-2
http://crantastic.org/packages/fracprolif
Functions for fitting data to a quiescent growth model, i.e. a growth
process that involves members of the population who stop dividing or
propagating.
* GUniFrac (1.0)
Maintainer: Jun Chen
Author(s): Jun Chen
License: GPL-2
http://crantastic.org/packages/GUniFrac
Generalized UniFrac distance for comparing microbial communities.
Permutational multivariate analysis of variance using multiple
distance matrices.
* MAMS (0.1)
Maintainer: Thomas Jaki
Author(s): Thomas Jaki <jaki.thomas at gmail.com> and Dominic Magirr
<d.magirr at lancaster.ac.uk>
License: GPL-2
http://crantastic.org/packages/MAMS
Designing multi-arm multi-stage studies with normal endpoints and
known variance
* mmand (0.1.0)
Maintainer: Jon Clayden
Author(s): Jon Clayden
License: GPL-2
http://crantastic.org/packages/mmand
This package provides tools for performing mathematical morphology
operations, such as erosion and dilation, on data of arbitrary
dimensionality. It can also be used for smoothing and other image
processing-style operations.
* muma (1.0)
Maintainer: Edoardo Gaude
Author(s): Edoardo Gaude, Dimitrios Spiliotopoulos, Silvia Mari, Andrea Spitaleri
and Michela Ghitti
License: GPL-2
http://crantastic.org/packages/muma
Preprocessing of metabolomic data (normalization and scalings);
Principal Component Analysis with help tool for choosing
best-separating principal components and automatic outlier testing;
automatic univariate analysis for parametric and non-parametric
data, with report generation (volcano and box plots); partial least
sqaure discriminant analysis (PLS-DA); orthogonal partial least
square discriminant analysis (OPLS-DA); Statistical Total
Correlation Spectroscopy (STOCSY); Ratio Analysis NMR SpectroscopY
(RANSY).
* okmesonet (0.1.1)
Maintainer: Brady Allred
Author(s): Brady Allred, Torre Hovick, Samuel Fuhlendorf
License: GPL (>= 2)
http://crantastic.org/packages/okmesonet
okmesonet retrieves and summarizes Oklahoma (USA) Mesonet
climatological data provided by the Oklahoma Climatological Survey.
Measurements are recorded every five minutes at approximately 120
stations throughout Oklahoma and are available in near real-time.
* QRM (0.4-7)
Maintainer: Bernhard Pfaff
Author(s): Bernhard Pfaff
License: GPL (>= 2)
http://crantastic.org/packages/QRM
This package is designed to accompany the book Quantitative Risk
Management: Concepts, Techniques and Tools by Alexander J. McNeil,
Rudiger Frey and Paul Embrechts.
* rcppbugs (0.0.8)
Maintainer: Whit Armstrong
Author(s): Whit Armstrong <armstrong.whit at gmail.com>
License: GPL-3
http://crantastic.org/packages/rcppbugs
R binding for cppbugs
* RfmriVC (1.0)
Maintainer: Stefanie Kalus
Author(s): Ludwig Bothmann, Stefanie Kalus
License: GPL-2
http://crantastic.org/packages/RfmriVC
A varying coefficient on the stimulus effect is introduced into the
voxelwise fMRI regression model. By this the effects of the
canonical hemodynamic response function are allowed to vary with
another variable, like for example time or a vigilance parameter.
* risaac (0.1)
Maintainer: David L Gibbs
Author(s): David L Gibbs
License: GPL-3
http://crantastic.org/packages/risaac
Uses the ISAAC algorithm:
http://burtleburtle.net/bob/rand/isaacafa.html
* rknn (1.0)
Maintainer: Shengqiao Li
Author(s): Shengqiao Li <shli at stat.wvu.edu>
License: GPL (>= 2)
http://crantastic.org/packages/rknn
Random KNN Classification and Regression
* superdiag (1.1)
Maintainer: Tsung-han Tsai
Author(s): Tsung-han Tsai <t.tsai at wustl.edu>, Jeff Gill <jgill at wustl.edu> and
Jonathan Rapkin <rapkin at wustl.edu>
License: GPL
http://crantastic.org/packages/superdiag
A Comprehensive Test Suite for Markov Chain Nonconvergence.
* weightedKmeans (1.2.0)
Maintainer: Graham Williams
Author(s): Graham Williams, Joshua Z Huang, Xiaojun Chen, Qiang Wang, Longfei
Xiao
License: GPL (>= 3)
http://crantastic.org/packages/weightedKmeans
Entropy weighted kmeans (ewkm) is a weighted subspace clustering
algorithm that is well suited to very high dimensional data. Weights
are calculated as the importance of a variable with regard to
cluster membership. The feature group weighted kmenas (fgkm) extends
this concept by grouping features and weighting the group in
addition to weihgting individual features.
Updated packages
----------------
ade4 (1.5-0), ahaz (1.12), ape (3.0-3), arules (1.0-8), BMA (3.15.1),
bsml (1.5-1), cec2005benchmark (1.0.1), CHCN (1.4), cloudRmpi (1.1),
cloudRmpiJars (1.1), CONORData (1.0.1), constrainedKriging (0.1.7),
coxme (2.2-2), cplexAPI (1.2.2), CrypticIBDcheck (0.2-3), deldir
(0.0-19), demography (1.12), dplR (1.5.4), dynaTree (1.2-6), earth
(3.2-3), ENmisc (1.2-4), ffbase (0.4), ffbase (0.4-1), fmsb (0.3.4),
fracprolif (1.0.2), frmqa (0.1-1), gamlss (4.1-5), gcdnet (1.0.1),
GenSA (1.0.3), geospt (0.5-0), GLDEX (1.0.4.4), glmmLasso (1.0.2),
glmnet (1.7.4), gvcm.cat (1.3), HMP (1.1), ivbma (1.02), libamtrack
(0.5.3), locfit (1.5-8), MASS (7.3-18), MetaQC (0.1.10-1), mgcv
(1.7-14), MPCI (1.0.4), multitable (1.4), multitaper (1.0-0), NetComp
(1.4), noia (0.96), nortest (1.0-1), partsm (1.1), party (1.0-2),
pbkrtest (0.3-1), pcaL1 (1.1), pcalg (1.1-5), pdc (0.2), QCA (1.0-3),
QCAGUI (1.8-4), qualityTools (1.53), rattle (2.6.18), rcom (2.2-5),
rcom (2.2-4), rcppbugs (0.0.8), rebmix (2.4.0), rfPermute (1.1),
RghcnV3 (2.7), RnavGraph (0.1.3), robust (0.3-19), rpartScore (1.0-0),
rreval (1.1), rscproxy (2.0-1), rtape (2.0), rworldmap (0.1310), smatr
(3.2.6), snow (0.3-9), SNPRelate (0.9.5), spBayes (0.2-4), spider
(1.1-3), sprint (1.0.2), survival (2.36-13), survival (2.36-14),
textcat (0.1-1), trio (1.5.0), WGCNA (1.20)
This email provided as a service for the R community by
http://crantastic.org.
Like it? Hate it? Please let us know: cranatic at gmail.com.
More information about the R-help
mailing list