[R] Odd gridding pattern when plotting
Balko, Justin
justin.balko at Vanderbilt.Edu
Fri Sep 30 17:42:39 CEST 2011
Hi, I'm no longer on the subscribing list, but was hoping to get my question posted. Please inform if this is ok, although I am guessing you wont post with the image below. If so, let me know and I will resend without the image.
Thanks
Hi,
I just upgraded my system and my version of R all at once. Upon running old code for heatmaps etc, I suddenly notice that there is an odd grid pattern appearing in all of my plots. An example is below:
#example from ?image
require(grDevices) # for colours
x <- y <- seq(-4*pi, 4*pi, len=27)
r <- sqrt(outer(x^2, y^2, "+"))
image(z = z <- cos(r^2)*exp(-r/6), col=gray((0:32)/32))
image(z, axes = FALSE, main = "Math can be beautiful ...",
xlab = expression(cos(r^2) * e^{-r/6}))
contour(z, add = TRUE, drawlabels = FALSE)
Any ideas what is causing this? I can't seem to figure it out. I'm not sure the bmp image can/will be posted, so maybe you can just take my word for it. It is a gridding pattern in white, that appears over the plot area only. Vertical lines are every 4 units, evenly spaced. Horizontal lines appear at every unit, then stop for a while (6-7 units, then appear every unit for 4-5 units). Simple plots like plot(x,y) do not seem to produce it, or at least I can't see it. Any ideas are helpful.
Thanks!
Justin M. Balko, Pharm.D., Ph.D.
Research Fellow, Arteaga Lab
Department of Medicine
Division of Hematology/Oncology
Vanderbilt University
777 Preston Research Building
Nashville TN, 37232-6307
Ph: 615-936-1495
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