[R] parsing error when using R CMD check
murdoch.duncan at gmail.com
Sat Sep 17 00:06:21 CEST 2011
On 11-09-16 4:48 PM, Tarca, Adi wrote:
> Hi all,
> I am trying to run R CMD check on a package which passes R CMD INSTALL.
> The check stops because of a parsing problem in the example of a given function at this line:
> return(res[res$ID %in% list$targetGeneSets,])
> The code is ok, since it runs if I paste it in R.
> Is this a known parsing issue in R CMD check?
Percent signs in Rd files are comments unless they are escaped. The
parser sees your code as
Rewrite it as
return(res[res$ID \%in\% list$targetGeneSets,])
> R version 2.13.0 (2011-04-13)
> Platform: x86_64-unknown-linux-gnu (64-bit)
> Adi Laurentiu TARCA, Ph.D.
> Assistant Professor (Research),
> Department of Computer Science& Center for Molecular Medicine and Genetics, Wayne State University,
> Director, Bioinformatics and Computational Biology Unit, Perinatology Research Branch (NICHD),
> 3990 John R., Office 4809,
> Detroit, Michigan 48201
> Tel: 1-313-5775305
> [[alternative HTML version deleted]]
> R-help at r-project.org mailing list
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.
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