[R] installing FastRWeb

Sat Oct 29 19:46:16 CEST 2011

A missing X11/Intrinsic.h: suggests you also have to install some X11 
header files that are still missing ...

Uwe Ligges

On 29.10.2011 19:44, financial engineer wrote:
>
>
>
>
>
> hi Uwe,
>
> thanks for your response.
>
> I ran the following as per the instructions on the Cairo website:
>
>
> sudo apt-get install libcairo2-dev
>
> following which I tried to install FastRWeb again (hopefully I have not missed any steps in between)....can you pls. tell me how I can fix this error..
>
>
>> install.packages("FastRWeb",dep=TRUE)
> Installing package(s) into ‘/home/ba/R/i686-pc-linux-gnu-library/2.12’
> (as ‘lib’ is unspecified)
> also installing the dependency ‘Cairo’
>
> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Cairo_1.5-0.tar.gz'
> Content type 'application/x-gzip' length 81214 bytes (79 Kb)
> opened URL
> ==================================================
> downloaded 79 Kb
>
> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/FastRWeb_1.0-0.tar.gz'
> Content type 'application/x-gzip' length 71072 bytes (69 Kb)
> opened URL
> ==================================================
> downloaded 69 Kb
>
> * installing *source* package ‘Cairo’ ...
> checking for gcc... gcc
> checking whether the C compiler works... yes
> checking for C compiler default output file name... a.out
> checking for suffix of executables...
> checking whether we are cross compiling... no
> checking for suffix of object files... o
> checking whether we are using the GNU C compiler... yes
> checking whether gcc accepts -g... yes
> checking for gcc option to accept ISO C89... none needed
> checking how to run the C preprocessor... gcc -E
> checking for grep that handles long lines and -e... /bin/grep
> checking for egrep... /bin/grep -E
> checking for ANSI C header files... yes
> checking for sys/wait.h that is POSIX.1 compatible... yes
> checking for sys/types.h... yes
> checking for sys/stat.h... yes
> checking for stdlib.h... yes
> checking for string.h... yes
> checking for memory.h... yes
> checking for strings.h... yes
> checking for inttypes.h... yes
> checking for stdint.h... yes
> checking for unistd.h... yes
> checking for string.h... (cached) yes
> checking sys/time.h usability... yes
> checking sys/time.h presence... yes
> checking for sys/time.h... yes
> checking for unistd.h... (cached) yes
> checking for an ANSI C-conforming const... yes
> checking for pkg-config... /usr/bin/pkg-config
> checking whether pkg-config knows about cairo... yes
> checking for configurable backends... cairo cairo-ft cairo-pdf cairo-png cairo-ps cairo-xlib cairo-xlib-xrender
> configure: CAIRO_CFLAGS=-pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1
> checking if R was compiled with the RConn patch... no
> checking cairo.h usability... yes
> checking cairo.h presence... yes
> checking for cairo.h... yes
> checking for PNG support in Cairo... yes
> checking for ATS font support in Cairo... no
> configure: CAIRO_LIBS=-L/usr/lib/i386-linux-gnu -lfreetype -lpng12 -lz -lXrender -lcairo -lX11
> checking for library containing deflate... none required
> checking whether Cairo programs can be compiled... yes
> checking whether cairo_image_surface_get_format is declared... no
> checking for FreeType support in cairo... yes
> checking whether FreeType needs additional flags... no
> checking wheter libjpeg works... yes
> checking wheter libtiff works... no
> configure: creating ./config.status
> config.status: creating src/Makevars
> config.status: creating src/cconfig.h
> ** libs
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c cairobem.c -o cairobem.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c cairogd.c -o cairogd.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c cairotalk.c -o cairotalk.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c img-backend.c -o img-backend.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c img-jpeg.c -o img-jpeg.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c img-tiff.c -o img-tiff.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c pdf-backend.c -o pdf-backend.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c ps-backend.c -o ps-backend.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c svg-backend.c -o svg-backend.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c w32-backend.c -o w32-backend.o
> gcc -I/usr/share/R/include -pthread -I/usr/include/glib-2.0 -I/usr/lib/i386-linux-gnu/glib-2.0/include -I/usr/include/freetype2 -I/usr/include/libpng12 -I/usr/include/cairo -I/usr/include/pixman-1    -I. -Iinclude    -std=gnu99 -O3 -pipe -g -fpic  -std=gnu99 -O3 -pipe  -g -c xlib-backend.c -o xlib-backend.o
> xlib-backend.c:34:74: fatal error: X11/Intrinsic.h: No such file or directory
> compilation terminated.
> make: *** [xlib-backend.o] Error 1
> ERROR: compilation failed for package ‘Cairo’
> * removing ‘/home/ba/R/i686-pc-linux-gnu-library/2.12/Cairo’
> ERROR: dependency ‘Cairo’ is not available for package ‘FastRWeb’
> * removing ‘/home/ba/R/i686-pc-linux-gnu-library/2.12/FastRWeb’
>
> The downloaded packages are in
> 	‘/tmp/RtmpFnOoDw/downloaded_packages’
> Warning messages:
> 1: In install.packages("FastRWeb", dep = TRUE) :
>    installation of package 'Cairo' had non-zero exit status
> 2: In install.packages("FastRWeb", dep = TRUE) :
>    installation of package 'FastRWeb' had non-zero exit status
>
>
>
>> Date: Sat, 29 Oct 2011 19:32:13 +0200
>> From: ligges at statistik.tu-dortmund.de
>> To: fin_engr at hotmail.com
>> CC: r-help at r-project.org
>> Subject: Re: [R] installing FastRWeb
>>
>> Please do read the output, it tells you:
>>
>> Please install cairo (http://www.cairographics.org/) and/or set
>> CAIRO_CFLAGS/LIBS correspondingly.
>>
>> And that is exactly what you need to do, it cannot be solved by
>> installing R packages....
>>
>> Best,
>> Uwe Ligges
>>
>>
>> On 29.10.2011 18:24, financial engineer wrote:
>>>
>>> hi,
>>>
>>> I am working on Ubuntu and tried to install FastRWeb, but am getting the following error for installation of cairo.h.
>>>
>>>    install.packages("FastRWeb",dep=TRUE)
>>> Installing package(s) into ‘/home/ba/R/i686-pc-linux-gnu-library/2.12’
>>> (as ‘lib’ is unspecified)
>>> also installing the dependency ‘Cairo’
>>>
>>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Cairo_1.5-0.tar.gz'
>>> Content type 'application/x-gzip' length 81214 bytes (79 Kb)
>>> opened URL
>>> ==================================================
>>> downloaded 79 Kb
>>>
>>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/FastRWeb_1.0-0.tar.gz'
>>> Content type 'application/x-gzip' length 71072 bytes (69 Kb)
>>> opened URL
>>> ==================================================
>>> downloaded 69 Kb
>>>
>>> * installing *source* package ‘Cairo’ ...
>>> checking for gcc... gcc
>>> checking whether the C compiler works... yes
>>> checking for C compiler default output file name... a.out
>>> checking for suffix of executables...
>>> checking whether we are cross compiling... no
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C compiler... yes
>>> checking whether gcc accepts -g... yes
>>> checking for gcc option to accept ISO C89... none needed
>>> checking how to run the C preprocessor... gcc -E
>>> checking for grep that handles long lines and -e... /bin/grep
>>> checking for egrep... /bin/grep -E
>>> checking for ANSI C header files... yes
>>> checking for sys/wait.h that is POSIX.1 compatible... yes
>>> checking for sys/types.h... yes
>>> checking for sys/stat.h... yes
>>> checking for stdlib.h... yes
>>> checking for string.h... yes
>>> checking for memory.h... yes
>>> checking for strings.h... yes
>>> checking for inttypes.h... yes
>>> checking for stdint.h... yes
>>> checking for unistd.h... yes
>>> checking for string.h... (cached) yes
>>> checking sys/time.h usability... yes
>>> checking sys/time.h presence... yes
>>> checking for sys/time.h... yes
>>> checking for unistd.h... (cached) yes
>>> checking for an ANSI C-conforming const... yes
>>> checking for pkg-config... /usr/bin/pkg-config
>>> checking whether pkg-config knows about cairo... no
>>> configure: CAIRO_LIBS is unset, attempting to guess it.
>>> configure: CAIRO_CFLAGS=
>>> checking if R was compiled with the RConn patch... no
>>> checking cairo.h usability... no
>>> checking cairo.h presence... no
>>> checking for cairo.h... no
>>> configure: error: Cannot find cairo.h! Please install cairo (http://www.cairographics.org/) and/or set CAIRO_CFLAGS/LIBS correspondingly.
>>> ERROR: configuration failed for package ‘Cairo’
>>> * removing ‘/home/ba/R/i686-pc-linux-gnu-library/2.12/Cairo’
>>> ERROR: dependency ‘Cairo’ is not available for package ‘FastRWeb’
>>> * removing ‘/home/ba/R/i686-pc-linux-gnu-library/2.12/FastRWeb’
>>>
>>> The downloaded packages are in
>>>       ‘/tmp/Rtmpla4fs8/downloaded_packages’
>>> Warning messages:
>>> 1: In install.packages("FastRWeb", dep = TRUE) :
>>>     installation of package 'Cairo' had non-zero exit status
>>> 2: In install.packages("FastRWeb", dep = TRUE) :
>>>     installation of package 'FastRWeb' had non-zero exit status
>>>
>>> so, I tried to install Cairo, but I get the following error:
>>>
>>> install.packages("Cairo")
>>> Installing package(s) into ‘/home/ba/R/i686-pc-linux-gnu-library/2.12’
>>> (as ‘lib’ is unspecified)
>>> trying URL 'http://lib.stat.cmu.edu/R/CRAN/src/contrib/Cairo_1.5-0.tar.gz'
>>> Content type 'application/x-gzip' length 81214 bytes (79 Kb)
>>> opened URL
>>> ==================================================
>>> downloaded 79 Kb
>>>
>>> * installing *source* package ‘Cairo’ ...
>>> checking for gcc... gcc
>>> checking whether the C compiler works... yes
>>> checking for C compiler default output file name... a.out
>>> checking for suffix of executables...
>>> checking whether we are cross compiling... no
>>> checking for suffix of object files... o
>>> checking whether we are using the GNU C compiler... yes
>>> checking whether gcc accepts -g... yes
>>> checking for gcc option to accept ISO C89... none needed
>>> checking how to run the C preprocessor... gcc -E
>>> checking for grep that handles long lines and -e... /bin/grep
>>> checking for egrep... /bin/grep -E
>>> checking for ANSI C header files... yes
>>> checking for sys/wait.h that is POSIX.1 compatible... yes
>>> checking for sys/types.h... yes
>>> checking for sys/stat.h... yes
>>> checking for stdlib.h... yes
>>> checking for string.h... yes
>>> checking for memory.h... yes
>>> checking for strings.h... yes
>>> checking for inttypes.h... yes
>>> checking for stdint.h... yes
>>> checking for unistd.h... yes
>>> checking for string.h... (cached) yes
>>> checking sys/time.h usability... yes
>>> checking sys/time.h presence... yes
>>> checking for sys/time.h... yes
>>> checking for unistd.h... (cached) yes
>>> checking for an ANSI C-conforming const... yes
>>> checking for pkg-config... /usr/bin/pkg-config
>>> checking whether pkg-config knows about cairo... no
>>> configure: CAIRO_LIBS is unset, attempting to guess it.
>>> configure: CAIRO_CFLAGS=
>>> checking if R was compiled with the RConn patch... no
>>> checking cairo.h usability... no
>>> checking cairo.h presence... no
>>> checking for cairo.h... no
>>> configure: error: Cannot find cairo.h! Please install cairo (http://www.cairographics.org/) and/or set CAIRO_CFLAGS/LIBS correspondingly.
>>> ERROR: configuration failed for package ‘Cairo’
>>> * removing ‘/home/ba/R/i686-pc-linux-gnu-library/2.12/Cairo’
>>>
>>> The downloaded packages are in
>>>       ‘/tmp/Rtmpla4fs8/downloaded_packages’
>>> Warning message:
>>> In install.packages("Cairo") :
>>>     installation of package 'Cairo' had non-zero exit status
>>>
>>> Can you pls. let me know how I can fix this.....thx!
>>>    		 	   		
>>> 	[[alternative HTML version deleted]]
>>>
>>>
>>>
>>>
>>> ______________________________________________
>>> R-help at r-project.org mailing list
>>> https://stat.ethz.ch/mailman/listinfo/r-help
>>> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
>>> and provide commented, minimal, self-contained, reproducible code.
>
>