[R] nls help
dieter.menne at menne-biomed.de
Wed Nov 30 19:27:02 CET 2011
> datum <- structure(list(Y = c(415.5, 3847.83333325, 1942.833333325,
> 950.142857325, 2399.5833335, 804.75, 579.5, 841.708333325, 494.053571425
> ), X = c(1.081818182, 0.492727273, 0.756363636, 0.896363636,
> 1.518181818, 0.499166667, 1.354545455, 1.61, 1.706363636, 1.063636364
> )), .Names = c("Y", "X"), row.names = c(NA, -10L), class = "data.frame")
> with(datum, plot(Y~X))
> As you can see there is a non-linear association between X and Y, and I
> would like to fit an appropriate model. I was thinking an exponential
> decay model might work well.
> I tried the following (a and k starting values are based off of a lm()
> fit), but get an error.
> fit <- nls(Y ~ a*exp(-k * X), datum, start=c(a=3400, k=1867))
> Error in nlsModel(formula, mf, start, wts) :
> singular gradient matrix at initial parameter estimates
For more complex cases, plot the initial function you are trying to fit, but
in this case it is easy to see that k is more in the order of 2.
So try with k=2.
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