[R] glht for lme object with significant interaction term
anord
andreas.nord at zooekol.lu.se
Wed Nov 23 00:27:32 CET 2011
Dear all,
I'm working on some data from an experiment on the breeding behavior of
birds. In short, I have been measuring how the time spent on performing a
certain task (variable 'mean_on_active') differs over time (variable 'day',
2 levels) across three experimental categories (variable 'treat'; levels
'C', 'R', 'E'). The model shows a significant interaction between treatment
and day. To have a closer look at this, I would like to do multiple
comparisons for treatment levels within day (i.e. across treatments for each
day in turn). I have browsed the forum for a way of doing this using the
glht function, but haven't found a good solution to my problem.
Any hints on how to proceed, or on other methods that might be (more)
appropriate? Final model output below, data attached.
http://r.789695.n4.nabble.com/file/n4097865/sub.data.txt sub.data.txt
Kind regards,
Andreas
##Final model
m.final<-lme(mean.on.active~treat+day+treat:day,random=1|id,na.action=na.omit)
summary(m.final)
Linear mixed-effects model fit by REML
Data: NULL
AIC BIC logLik
1051.779 1075.757 -517.8896
Random effects:
Formula: ~1 | id
(Intercept) Residual
StdDev: 6.276309 5.473167
Fixed effects: mean_on_active ~ treat * day
Value Std.Error DF t-value p-value
(Intercept) 24.987123 1.792599 75 13.939049 0.0000
treatE 15.661119 2.327329 73 6.729225 0.0000
treatR 1.133678 2.228713 73 0.508670 0.6125
day6-7 -1.068160 1.758899 73 -0.607289 0.5455
treatE:day6-7 -6.650690 2.335567 73 -2.847570 0.0057
treatR:day6-7 -1.495927 2.273071 73 -0.658108 0.5125
Correlation:
(Intr) treatE treatR day6-7 tE:6-7
treatE -0.736
treatR -0.747 0.572
day6-7 -0.482 0.372 0.389
treatE:day6-7 0.361 -0.522 -0.292 -0.753
treatR:day6-7 0.370 -0.281 -0.524 -0.774 0.582
Standardized Within-Group Residuals:
Min Q1 Med Q3 Max
-2.5774244 -0.4585991 -0.1360731 0.3902143 3.9752257
Number of Observations: 154
Number of Groups: 76
--
View this message in context: http://r.789695.n4.nabble.com/glht-for-lme-object-with-significant-interaction-term-tp4097865p4097865.html
Sent from the R help mailing list archive at Nabble.com.
More information about the R-help
mailing list