[R] appending collums in for loop

[stephen sefick]

I don't think I understand.  Can you work up a dummy example that will
run independent of your actual data, and produce the problem?  This
will help everyone diagnose the problem.  Naively this sounds like an
indexing problem.

Stephen

On Mon, Mar 21, 2011 at 7:56 AM, Who Am I? <s1008701 at student.hsleiden.nl> wrote:
> I forgot to say I need it to work in a for loop because it will be used for
> over 35 files. I previously programmed it in the most unorthodox way
> possible:
>
> setwd("J:/Stage/Datasets2/Datasets/outData")
> data1<-read.table("AR1000900A_N_241110_(Mapping250K_Nsp)_2,Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls",sep="\t", dec=",", fill=T, header=T)
> bukuA<-read.table("AR1000900A_N_241110_(Mapping250K_Nsp)_2,Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
> bukuB<-read.table("AR1000901A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
> bukuC<-read.table("AR1000902A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
> bukuD<-read.table("AR1000903A_N_291110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
> bukuE<-read.table("AR1000904A_N_241110_(Mapping250K_Nsp),Mapping250K_Nsp,CNprobes.tab
> _SNP_IDs.xls _0,5 -0,51.xls", sep="\t", dec=",", fill=T, header=T)
> bukuA<-data.frame(bukuA)
> bukuB<-data.frame(bukuB)
> bukuC<-data.frame(bukuC)
> bukuD<-data.frame(bukuD)
> bukuE<-data.frame(bukuE)
> regionMatchA<-cbind(data1, bukuA[match(data1$Pos, bukuA$Pos),])
> regionMatchB<-cbind(data1, bukuB[match(data1$Pos, bukuB$Pos),])
> regionMatchC<-cbind(data1, bukuC[match(data1$Pos, bukuC$Pos),])
> regionMatchD<-cbind(data1, bukuD[match(data1$Pos, bukuD$Pos),])
> regionMatchE<-cbind(data1, bukuE[match(data1$Pos, bukuE$Pos),])
>
>
> regionMatchABCDE<-cbind(data1[,7],data1[,3],
> regionMatchA[,10:18],regionMatchB[,10:18],regionMatchC[,10:18],regionMatchD[,10:18],regionMatchE[,10:18])
> write.table(regionMatchABCDE, file= "Array0-1-2-3-4-5_0,5 -0,5.xls",
> append=F, col.names=T, row.names=F, quote=F, sep = "\t", dec=",")
>
>
> --
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>
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>



-- 
Stephen Sefick
____________________________________
| Auburn University                                         |
| Biological Sciences                                      |
| 331 Funchess Hall                                       |
| Auburn, Alabama                                         |
| 36849                                                           |
|___________________________________|
| sas0025 at auburn.edu                                  |
| http://www.auburn.edu/~sas0025                 |
|___________________________________|

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