[R] biplot breakdown help
ehlers at ucalgary.ca
Fri Mar 11 01:37:13 CET 2011
On 2011-03-09 12:14, chris20 wrote:
> I am trying to understand how the biplot.prcomp is constructed so I can
> manipulate it to emphasise particular observations and reduce the number of
> variables shown.
> The prcomp model I have ran has cor=TRUE and scale=TRUE
> I have worked out from looking at str(prcomp.model) that...
> prcomp.model$x = the observations ploted in the biplot
> prcomp.model$rotation = the variables that form the arrows.
> But there appears to be a scaling factor because when I plot
> biplot(prcomp.model$rotation, prcomp.model$x)
> The biplot is slightly off scale compared with biplot(prcomp.model)
Look at the code; it's pretty short.
You may want to compare:
biplot(prcomp.model$x[, 1:2], prcomp.model$rotation[, 1:2])
> Under ?biplot.prcomp it talks about lambda^scale and lambda^(1-scale) but I
> just can't seem to work it out so that the two biplots look the same. HELP!!
> View this message in context: http://r.789695.n4.nabble.com/biplot-breakdown-help-tp3344458p3344458.html
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> and provide commented, minimal, self-contained, reproducible code.
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