[R] R

Bert Gunter gunter.berton at gene.com
Thu Jul 28 17:35:44 CEST 2011


We try not to do homework on this list.

-- Bert

On Thu, Jul 28, 2011 at 8:11 AM, Rui Oliveira <rui18oliver at gmail.com> wrote:
> Good afternoon.
> I am a master student in University of Porto in Portugal. At this moment I’m
> starting to use R, so I have some doubts.
> The aim of my analysis is:  calculate a pairwise FST matrix from fasta file
> and creat a principal component analyses with adegenet package (I use seqinr
> and ape package to read this file, then I convert this file into a genind
> object with DNA2genind function provide in adegenet package). After convert
> my file the pairwise.fst function is not found.
> If you could help me would be great.
> Greetings: Rui Oliveira
> --
> -------------------------------------------------------------------
> Rui Manuel Oliveira
>        [[alternative HTML version deleted]]
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"Men by nature long to get on to the ultimate truths, and will often
be impatient with elementary studies or fight shy of them. If it were
possible to reach the ultimate truths without the elementary studies
usually prefixed to them, these would not be preparatory studies but
superfluous diversions."

-- Maimonides (1135-1204)

Bert Gunter
Genentech Nonclinical Biostatistics

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