[R] Hardy Weinberg Case Control Test in gap R package

[Brad McNeney]

As an alternative, you could try the HWExact function in the GWASExactHW package. (Haven't tried it myself though ...).

Brad

----- Original Message -----
> From: "Jim Silverton" <jim.silverton at gmail.com>
> To: r-help at r-project.org
> Sent: Tuesday, 12 July, 2011 8:33:54 PM
> Subject: Re: [R] Hardy Weinberg Case Control Test in gap R package
> Hi,
> I am using the gap R package to do the Hardy Weinberg Case Control
> test for
> many SNP. I am not sure what the values initial1 and initial2 should
> be for
> the test. I tried values but they failed.
> I emailed the author but to no avail. There seems to be some
> documentation
> that is deleted at the top, if anyone can direct me how to get this I
> will
> be grateful.
> 
> --
> Thanks,
> Jim.
> 
> [[alternative HTML version deleted]]
> 
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