[R] how to order each element according to alphabet
djmuser at gmail.com
Fri Jul 15 11:40:22 CEST 2011
Is this what you're looking for?
Lines <- "
# Read in the above lines (for purposes of this example only)
# Note the stringsAs Factors = FALSE option!
df <- read.csv(textConnection(Lines), header = FALSE, stringsAsFactors = FALSE)
dm <- as.matrix(df) # convert to a character matrix
# Function to sort a character string in alphabetical (lexical) order
sortfun <- function(x)
paste(sort(unlist(strsplit(x, ''))), collapse = '')
# Apply to the rows of the matrix
t(apply(df, 1, function(x) sapply(x, sortfun)))
V1 V2 V3
[1,] "AGS" "UWX" "ADEFJLO"
[2,] "E" "DEITW" "DFOR"
If you need to do this for only a subset of your variables, create a
character submatrix and follow the script above on that, after which
you would need to do some post-processing on your own.
On Thu, Jul 14, 2011 at 6:18 PM, onthetopo <jint83 at sina.com> wrote:
> Hi there,
> I have a large amino acid csv file like this:
> There is a problem with this file, since LV and VL are in fact the same
> How do I order each element according to alphabetical order so that the
> desired output would look like:
> View this message in context: http://r.789695.n4.nabble.com/how-to-order-each-element-according-to-alphabet-tp3668997p3668997.html
> Sent from the R help mailing list archive at Nabble.com.
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> and provide commented, minimal, self-contained, reproducible code.
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