[R] speed up subsetting with certain conditions
duke.lists at gmx.com
Thu Jan 13 17:19:37 CET 2011
On 1/12/11 6:44 PM, Duke wrote:
> Thanks so much for your suggestion Martin. I had Bioconductor
> installed but I honestly do not know all its applications. Anyway, I
> am testing GenomicRanges with my data now. I will report back when I
> get the result.
I got the results. My code took ~ 580 min ( ~ 10 hrs) to finish, where
as using GenomicRanges per Martin suggested, it took only 22 min (about
30 times less!). Thanks so much for this improvement Martin.
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