[R] [BioC] Make.cdf.package error

[elodiem]

Hi everybody, 

I tried to analyze a custom Affymetrix 3'-biased Array. So I wanted to make
a cdf package. (My CDF file size is 1.12Go). 

I tried several methods but the same error occured 

Method 1

> #Set the working directory 
> setwd("D:/Analyse R/Cel files") 
> #library to create cdf env 
> library("makecdfenv") 
>#Create cdf environment 
>pkgpath <- tempdir() 
>make.cdf.package("file.cdf", 
           cdf.path=getwd(), 
           compress=FALSE, species = "Homo_sapiens", 
           package.path = pkgpath, 
           verbose=TRUE) 
dir(pkgpath) 

Method 2
#Set the working directory 
setwd("D:/Analyse R/Cel files") 
#library to create cdf env 
library("makecdfenv") 
#Create cdf environment 
env <- make.cdf.env("file.cdf") 


>Reading CDF file. 
>Error in .Call("reaD file", as.character(file), as.integer(3),
as.integer(compress), :promise already under evaluation: recursive default
argument reference or earlier problems? 

The two methods take about one hour and use all the RAM of my computer
(8Go). 

Is it a limit of memory? 
Is it a non appropriated method for my array? 

Thanks in advance for your response, 
Elodie 
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