[R] MCMC glmm
garciap
garciap at usal.es
Mon Feb 14 13:48:25 CET 2011
Hi to all the people,
I'm working with abundance data of some species, but containing too zero
values, and the factors are the ones typical in a BACI experiment
(Before-and-After-Control-Impact). Thus, these are two fixed factors. As the
data does not holds the normality and homogeneity of variances assumptions
of clasiccal ANOVA, I'm trying to fit a zero-altered model using the MCMC
glmm library.
I've two questions:
1.- how I can include an interaction between the BA (before and after) and
the CI (control-impact) components in this kind of models? I'm searching in
the notes available in the models but found no clear answer. My first
approach to this wil be to wrote a formula like: Abundance~BA+CI+BA*CI.
2.- Even when I try to fit a model without interactions I can't do it
because I obtain the following error:
> fit<-MCMCglmm(Abundancia~BA+CI, random=NULL,
> family="zapoisson",data=Trucha)
Error in MCMCglmm(Abundancia ~ BA + CI, random = NULL, family = "zapoisson",
:
please use idh(trait):units or us(trait):units or trait:units for error
structures involving multinomial data with more than 2 categories or
zero-infalted/altered/hurdle models
I don't know where is the problem, maybe because my original data is
organised as (obviously with much more data):
Abundance BA CI
5 1 1
3 2 1
6 1 2
Any idea or suggestion? Many thanks for your help and patience, best regards
Pablo
8 2 2
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