[R] finding overlapping regions

[Martin Morgan]

On 12/22/2011 05:50 AM, Naveen Thota wrote:
> Dear All,
> I am trying to finding overlapping regions in two diff datasets for that I
> am using IRanges. But I am getting an error in the process of doing the
> overlap. Advance thanks
>
>   df3.rl<-RangedData(IRanges(start=df3$V3,width=1),
> + space=df3$start)
> Error in .normargSEW0(start, "start") :
>    'start' must be a numeric vector (or NULL)

Please ask questions about Bioconductor packages on the Bioconductor 
mailing list

http://www.bioconductor.org/help/mailing-list/

The problem would appear to be that class(df3$V3) is not "numeric"

Martin

>
> Kumar
>
> 	[[alternative HTML version deleted]]
>
> ______________________________________________
> R-help at r-project.org mailing list
> https://stat.ethz.ch/mailman/listinfo/r-help
> PLEASE do read the posting guide http://www.R-project.org/posting-guide.html
> and provide commented, minimal, self-contained, reproducible code.


-- 
Computational Biology
Fred Hutchinson Cancer Research Center
1100 Fairview Ave. N. PO Box 19024 Seattle, WA 98109

Location: M1-B861
Telephone: 206 667-2793