[R] Compilation error of R-2.14.0 on Mac OS 10.7.2

Roebuck,Paul L proebuck at mdanderson.org
Thu Dec 8 21:25:08 CET 2011


Although I didn't try it, generally adding Fink to the mix is WRONG.
Don't try to mix Fink and anything else.


On 12/8/11 11:37 AM, "Jean-Baptiste Marquette" <marquett at iap.fr> wrote:

> Dear R gurus,
> 
> I attempt to install the latest version of R from source on my MacBook Pro,
> using latest versions of Xcode and gfortran for Lion and configure options:
> 
> ./configure --with-libintl-prefix=/sw --enable-R-shlib (this last option
> necessary to further install the Rpy Python package)
> 
> I got the following unreduced compilation error:
> 
> gcc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined
> dynamic_lookup -single_module -multiply_defined suppress -L/sw/lib
> -L/usr/local/lib -o tools.so text.o init.o Rmd5.o md5.o signals.o
> -L../../../../lib -lR -dylib_file
> libRblas.dylib:../../../../lib/libRblas.dylib -lintl -Wl,-framework
> -Wl,CoreFoundation
> make[6]: `Makedeps' is up to date.
> mkdir ../../../../library/tools/libs
> Error in dyn.load(file, DLLpath = DLLpath, ...) :
>   unable to load shared object
> '/Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so':
>   dlopen(/Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so, 6):
> Symbol not found: _libintl_dgettext
>   Referenced from:
> /Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so
>   Expected in: /Users/marquett/Downloads/R-2.14.0/lib/libR.dylib
>  in /Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so
> Error: impossible de charger le code R depuis le package Œtools¹
> Execution halted
> make[3]: *** [all] Error 1
> make[2]: *** [R] Error 1
> make[1]: *** [R] Error 1
> make: *** [R] Error 1
> 
> However the binary file matches the unresolved symbol:
> 
> grep _libintl_dgettext
> /Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so
> Binary file /Users/marquett/Downloads/R-2.14.0/library/tools/libs/tools.so
> matches
> 
> Any help welcome.
> 
> Cheers
> Jean-Baptiste
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