[R] Problems installing SJava

[Uwe Ligges]

On 17.08.2011 16:27, Luis Felipe Parra wrote:
> Uggs, as I understand rJava is for calling Java from within R and what I
> need is to call R within Java. Am I wrong?

Partly: rJava contains JRI these days, see:
http://www.rforge.net/rJava/

Uwe Ligges


> 2011/8/17 Uwe Ligges<ligges at statistik.tu-dortmund.de>
>
>> Are you sure "rJava" is not fine for you?
>>
>> Uwe Ligges
>>
>>
>> On 16.08.2011 17:16, Luis Felipe Parra wrote:
>>
>>> Hello, I am trying to install SJava but I haven't been able to complete it
>>> successfully. I have tried to install it from bioconductor using the
>>> followin code and got the following output:
>>>
>>>   source("http://www.**bioconductor.org/biocLite.R<http://www.bioconductor.org/biocLite.R>
>>>> ")
>>>>
>>> BioC_mirror = http://bioconductor.org
>>> Change using chooseBioCmirror().
>>>
>>>>      biocLite("SJava")
>>>>
>>> Using R version 2.12.2, biocinstall version 2.7.7.
>>> Installing Bioconductor version 2.7 packages:
>>> [1] "SJava"
>>> Please wait...
>>>
>>> Installing package(s) into ‘C:\Users\Hp\Documents/R/win-**library/2.12’
>>> (as ‘lib’ is unspecified)
>>> Mensajes de aviso perdidos
>>> In getDependencies(pkgs, dependencies, available, lib) :
>>>    package ‘SJava’ is not available
>>>
>>>
>>> And I have also tried the instructions: found in
>>> http://www.omegahat.org/**RSJava/<http://www.omegahat.org/RSJava/>.
>>>
>>> cd *$RHOME*/src/library
>>>     unzip SJava_0.69-0.zip
>>>     cd SJava
>>>     ./configure.win $RHOME
>>>     cd *$RHOME*/src/gnuwin32
>>>     make pkg-SJava
>>>
>>> But when I tried the line unzip SJava_0.69-0.zip it tells me the command
>>> cannot be recognized. If I unzip the file manually and then try the
>>> line ./configure.win
>>> $RHOME I get "." ccannot be recognized. Does somebody know what might I be
>>> doing wrong. Or which is an easier way to install this package?
>>>
>>> My computer is on Window 7 professional (32 bits)
>>>
>>> Thank you
>>>
>>> Felipe Parra
>>>
>>>         [[alternative HTML version deleted]]
>>>
>>>
>>>
>>>
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>>> and provide commented, minimal, self-contained, reproducible code.
>>>
>>
>
>
>
>
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