[R] efficient way to reduce running time

Kathie kathryn.lord2000 at gmail.com
Tue Aug 2 13:05:59 CEST 2011


Dear R users,

Would you plz tell me how to avoid this "for" loop blow??

I think there might be a better way to reduce running time.

----------------------------------------------------------------------------------------------
## y1 and y2 are n*1 vectors

        for (k in 1:n){
                ymax <- max( y1[k], y2[k] )
               
                i <- 0:ymax

                sums<- -lgamma(y1[k]-i+1)-lgamma(i+1)-lgamma(y2[k]-i+1)

                maxsums <- max(sums)

                sums <- sums - maxsums

                lsum <- log( sum(exp(sums)) ) + maxsums

                logbp[k] <- y1[k]  + y2[k]  + lsum
        }

------------------------------------------------------------------------------------

Any suggestion will be greatly appreciated.

Regards,

Kathryn Lord 

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