[R] bootstrapping problem
mimato
thomas.potrusil at i-med.ac.at
Fri Apr 29 09:01:57 CEST 2011
I want to classify bipolar neurons in human cochleas and have data of the
following structure:
Vol_Nuc Vol_Soma
1 186.23 731.96
2 204.58 4370.96
3 539.98 7344.86
4 477.71 6939.28
5 421.22 5588.53
6 276.61 1017.05
7 392.28 6392.32
8 424.43 6190.13
9 256.41 3850.51
10 249.17 3118.14
11 276.97 3037.29
12 295.30 3703.76
13 314.43 5265.97
14 301.15 5781.73
I already worked with Matlab (I´m not a programmer) and created nice
colourcoded dendrograms and also made some verifications of them. I started
now working with R and bootstrapped data with a library named pvclust. It
worked and R computed ...
here is the code:
library(pvclust)
data =
data.frame(Vol_Nuk=c(186.23,204.58,539.98,477.71,421.22,276.61,392.28,424.43,256.41,249.17,276.97,295.3,314.43,301.15),
Vol_Soma=c(731.96,4370.96,7344.86,6939.28,5588.53,1017.05,6392.32,6190.13,3850.51,3118.14,3037.29,3703.76,5265.97,5781.73))
plot(data)
result<-pvclust(data,nboot=100)
plot(result)
It is also not working using following commands:
cluster.bootstrap <- pvclust(Raw, nboot=1000, method.dist="abscor")
plot(cluster.bootstrap)
pvrect(cluster.bootstrap)
I always get the following problem:
mistake in plot.hclust(x$hclust, main = main, sub = sub, xlab = xlab, col =
col, :
invalid input for Dendrogram
Does anyone has an idea whats wrong...
Thanks a lot!!
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