[R] gee p values
John Sorkin
jsorkin at grecc.umaryland.edu
Fri Sep 10 05:11:26 CEST 2010
windows Vista
R 2.10.1
Is it possible to get p values from gee? Summary(geemodel) does not appear to produce p values.:
> fit4<- gee(y~time, id=Subject, data=data.frame(data))
Beginning Cgee S-function, @(#) geeformula.q 4.13 98/01/27
running glm to get initial regression estimate
(Intercept) time
1.1215614 0.8504413
> summary(fit4)
GEE: GENERALIZED LINEAR MODELS FOR DEPENDENT DATA
gee S-function, version 4.13 modified 98/01/27 (1998)
Model:
Link: Identity
Variance to Mean Relation: Gaussian
Correlation Structure: Independent
Call:
gee(formula = y ~ time, id = Subject, data = data.frame(data))
Summary of Residuals:
Min 1Q Median 3Q Max
-2.5224390768 -1.4384989365 -0.0006304408 1.4385426203 2.5229173416
Coefficients:
Estimate Naive S.E. Naive z Robust S.E. Robust z
(Intercept) 1.1215614 0.8023886 1.397778 0.31918831 3.513792
time 0.8504413 0.0993967 8.556031 0.03851821 22.078938
Estimated Scale Parameter: 2.642821
Number of Iterations: 1
Working Correlation
[,1] [,2] [,3]
[1,] 1 0 0
[2,] 0 1 0
[3,] 0 0 1
John David Sorkin M.D., Ph.D.
Chief, Biostatistics and Informatics
University of Maryland School of Medicine Division of Gerontology
Baltimore VA Medical Center
10 North Greene Street
GRECC (BT/18/GR)
Baltimore, MD 21201-1524
(Phone) 410-605-7119
(Fax) 410-605-7913 (Please call phone number above prior to faxing)
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