[R] How to Calculate the Pairwise LD for the given data?

[jacki.flo]

Dear all, 

I have the following data, which is the output from ms hudson software. 

segsites: 6 
positions: 0.1256 0.3122 0.3218 0.4970 0.5951 0.7943 
001010 
110101 
010100 
001010 
010100 

I want to make R function to calculate the R-Square across pairs separated
by <10% (the difference between positions  of SNPs must be < 0.10) of the
simulated genomic region. 

I have search this from many days but still did not find how to do in R. 
Could anyone help me in this regards? 

Thanks in advance! 
Regards, 
Jacki
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