[R] How to Pairwise LD for the given data?

[jacki.flo]

Dear all,

I have the following data, which is the output from ms hudson software.

segsites: 6
positions: 0.1256 0.3122 0.3218 0.4970 0.5951 0.7943
001010
110101
010100
001010
010100

I want to make R function to calculate the R-Square across pairs separated
by <10% (the difference between positions  of SNPs must be < 0.10) of the
simulated genomic region.

I have search this from many days but still did not find how to do in R.
Could anyone help me in this regards?

Thanks in advance!
Regards,
Jacki
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