[R] why biomaRt cannot extract 3UTR sequences for 1941 ENSGxxxxx ?
mailinglist.honeypot at gmail.com
Fri May 28 17:06:56 CEST 2010
1. You mistakenly posted this to the R-help list, when you should have
(and probably meant to) send to the bioconductor list. You might want
to repost there if you can't figure out the problem.
2. I just tried your query with 4 transcript IDs (one of them was a
duplicate) and it worked fine.
Maybe the error you are receiving is actually informative of what your
> Error in value[[3L]](cond) :
> Request to BioMart web service failed. Verify if you are still connected to the internet. Alternatively the BioMart web service is temporarily down.
and for some reason you're just having a problem talking to the
biomart service itself ...
Why not try your query with a small number of ensemble transcript id's
to see if that'll work?
Graduate Student: Computational Systems Biology
| Memorial Sloan-Kettering Cancer Center
| Weill Medical College of Cornell University
Contact Info: http://cbio.mskcc.org/~lianos/contact
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