[R] snow makeCluster (makeSOCKcluster) not working in R-2.11

[Ramon Diaz-Uriarte]

Interesting: I run into the same problem (also R-2.11) when using
Windows inside VirtualBox from a Debian host (i.e., I am running a
Debian GNU/Linux box that has VirtualBox, and I have a Windows XP as a
guest inside VirtualBox). But I attributed it to my setup (usage of
VirtualBox) as I was told that my code did run OK in a "true" Windows
machine with R-2.11.

By the way, the problem did not always show up, just most of the time
(about 80% to 90% of the attempts).


Best,

R.


On Wed, May 12, 2010 at 5:58 PM, Abhijit Dasgupta <dasgupab at mail.nih.gov> wrote:
> Hello,
>
> I was using snow to parallel-process some code in R-2.10 (32-bit
> windows. ). The code is as follows:
>
> require(foreach)
> require(doSNOW)
>
> cl <- makeCluster(6, type='SOCK')
> registerDoSNOW(cl)
> bl2 <- foreach(i=icount(length(unqmrno))) %dopar% {
> (some code here)
> }
> stopCluster(cl)
>
> When I run the same code in Windows R-2.11 (either 32-bit or 64-bit), R
> hangs at cl<-makeCluster(6, type='SOCK') and no R processes are spawned.
> I was wondering if others have encountered this problem, and any
> suggestions on solving this would be greatly appreciated.
> --
>
> Abhijit Dasgupta, PhD
>
> Statistician | Clinical Sciences Section | NIAMS/NIH
>
>
>        [[alternative HTML version deleted]]
>
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>



-- 
Ramon Diaz-Uriarte
Structural Biology and Biocomputing Programme
Spanish National Cancer Centre (CNIO)
http://ligarto.org/rdiaz
Phone: +34-91-732-8000 ext. 3019
Fax: +-34-91-224-6972