[R] unqiue problem
Assa Yeroslaviz
frymor at gmail.com
Mon Jun 14 14:54:06 CEST 2010
Hello everybody,
I have a a matrix of 2 columns and over 27k rows.
some of the rows are double , so I tried to remove them with the command
unique():
> Workbook5 <- read.delim(file = "Workbook5.txt")
> dim(Workbook5)
[1] 27748 2
> Workbook5 <- unique(Workbook5)
> dim(Workbook5)
[1] 20101 2
it removed a lot of line, but unfortunately not all of them. I wanted to add
the row names to the matrix and got this error message:
> rownames(Workbook5) <- Workbook5[,1]
Error in `row.names<-.data.frame`(`*tmp*`, value = c(1L, 2L, 3L, 4L, 5L, :
duplicate 'row.names' are not allowed
In addition: Warning message:
non-unique values when setting 'row.names': ‘A_51_P102339’,
‘A_51_P102518’, ‘A_51_P103435’, ‘A_51_P103465’,
‘A_51_P103594’, ‘A_51_P104409’, ‘A_51_P104718’,
‘A_51_P105869’, ‘A_51_P106428’, ‘A_51_P106799’,
‘A_51_P107176’, ‘A_51_P107959’, ‘A_51_P108767’,
‘A_51_P109258’, ‘A_51_P109708’, ‘A_51_P110341’,
‘A_51_P111757’, ‘A_51_P112427’, ‘A_51_P112662’,
‘A_51_P113672’, ‘A_51_P115018’, ‘A_51_P116496’,
‘A_51_P116636’, ‘A_51_P117666’, ‘A_51_P118132’,
‘A_51_P118168’, ‘A_51_P118400’, ‘A_51_P118506’,
‘A_51_P119315’, ‘A_51_P120093’, ‘A_51_P120305’,
‘A_51_P120738’, ‘A_51_P120785’, ‘A_51_P121134’,
‘A_51_P121359’, ‘A_51_P121412’, ‘A_51_P121652’,
‘A_51_P121724’, ‘A_51_P121829’, ‘A_51_P122141’,
‘A_51_P122964’, ‘A_51_P123422’, ‘A_51_P123895’,
‘A_51_P124008’, ‘A_51_P124719’, ‘A_51_P125648’,
‚ÄòA_51_P125679‚Äô, ‚ÄòA_51_P125779‚ [... truncated]
Is there a better way to discard the duplicataions in the text file (Excel
file is the origin).
> R.version
_
platform x86_64-apple-darwin9.8.0
arch x86_64
os darwin9.8.0
system x86_64, darwin9.8.0
status Patched
major 2
minor 11.1
year 2010
month 06
day 03
svn rev 52201
language R
version.string R version 2.11.1 Patched (2010-06-03 r52201)
THX
Assa
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ProbeID Transcript ID
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A_51_P114094 NM_153508.3
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A_51_P114136 NM_177294.4
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