[R] qplot in ggplot2 not working any longer - (what did I do?)

[Hadley Wickham]

For a quick fix, you probably need to reinstall plyr.
Hadley

On Wed, Jul 14, 2010 at 11:03 PM, stephen sefick <ssefick at gmail.com> wrote:
> This is the first time that I have tried to update packages with a
> tinkered around with .Rprofile.  I start R with R --vanilla and it
> does not load my .Rprofile, but when I issue the command
> update.packages() R downloads the packages as expected, but then seems
> to load .Rprofile before compiling the packages sources.  What am I
> doing wrong?
> kindest regards,
>
> Stephen Sefick
>
> see- Session info output and .Rprofile
>
> Ubuntu 10.04
> R 2.11.1
>
> Session info:
>
> R version 2.11.1 (2010-05-31)
> x86_64-pc-linux-gnu
>
>
> locale:
>  [1] LC_CTYPE=en_US.utf8       LC_NUMERIC=C
>  [3] LC_TIME=en_US.utf8        LC_COLLATE=en_US.utf8
>  [5] LC_MONETARY=C             LC_MESSAGES=en_US.utf8
>  [7] LC_PAPER=en_US.utf8       LC_NAME=C
>  [9] LC_ADDRESS=C              LC_TELEPHONE=C
> [11] LC_MEASUREMENT=en_US.utf8 LC_IDENTIFICATION=C
>
> attached base packages:
> [1] graphics  grDevices utils     datasets  stats     grid      methods
> [8] base
>
> other attached packages:
>  [1] gpclib_1.5-1            StreamMetabolism_0.03-3 maptools_0.7-34
>  [4] lattice_0.18-8          sp_0.9-64               foreign_0.8-40
>  [7] chron_2.3-35            zoo_1.6-3               vegan_1.17-3
> [10] ggplot2_0.8.8           proto_0.3-8             reshape_0.8.3
> [13] plyr_0.1.9
>
>
> .Rprofile:
> #source USGS graphing function for base data
> source("~/R_scripts/USGS.R")
> source("~/R_scripts/publication_ggplot2_theme.R")
> source("~/R_scripts/llScript.R")
>
>
> #set help_type
> options(help_type="html")
>
> #exit to get around anoying q behavior
> exit <- function(save="no"){q(save=save)}
>
> #most used libraries
> library(ggplot2)
> library(vegan)
> library(StreamMetabolism)
>
> #allow gpclib package to be used
> gpclibPermit()
>
>
>
> --
> Stephen Sefick
> ____________________________________
> | Auburn University                                   |
> | Department of Biological Sciences           |
> | 331 Funchess Hall                                  |
> | Auburn, Alabama                                   |
> | 36849                                                    |
> |___________________________________|
> | sas0025 at auburn.edu                             |
> | http://www.auburn.edu/~sas0025             |
> |___________________________________|
>
> Let's not spend our time and resources thinking about things that are
> so little or so large that all they really do for us is puff us up and
> make us feel like gods.  We are mammals, and have not exhausted the
> annoying little problems of being mammals.
>
>                                 -K. Mullis
>
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-- 
Assistant Professor / Dobelman Family Junior Chair
Department of Statistics / Rice University
http://had.co.nz/