[R] 0 exit status on packages update try

[stephen sefick]

I am not entirely sure what is going on.  I am sure that I am missing
something.  maptools won't detach...  Thanks for all of your help.

R 2.11.1
OS Ubuntu 10.04

R --vanilla

install.packages("sp", dep=TRUE)

Loading required package: reshape
Loading required package: plyr
Loading required package: grid
Loading required package: proto
This is vegan 1.17-3
Loading required package: zoo
Loading required package: stats
Loading required package: chron
Loading required package: maptools
Loading required package: foreign
Loading required package: sp
Loading required package: lattice

	Note: polygon geometry computations in maptools
 	depend on the package gpclib, which has a
 	restricted licence. It is disabled by default;
 	to enable gpclib, type gpclibPermit()

Checking rgeos availability as gpclib substitute:
FALSE
General Polygon Clipper Library for R (version 1.5-1)
	Type 'class ? gpc.poly' for help

[1] TRUE
* installing *source* package ‘sp’ ...
** libs
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c
Rcentroid.c -o Rcentroid.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c gcdist.c -o gcdist.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c init.c -o init.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c pip.c -o pip.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c pip2.c -o pip2.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c
sp_xports.c -o sp_xports.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c
surfaceArea.c -o surfaceArea.o
gcc -std=gnu99 -I/usr/share/R/include      -fpic  -g -O2 -c zerodist.c
-o zerodist.o
gcc -std=gnu99 -shared -o sp.so Rcentroid.o gcdist.o init.o pip.o
pip2.o sp_xports.o surfaceArea.o zerodist.o -L/usr/lib64/R/lib -lR
installing to /home/ssefick/R/x86_64-pc-linux-gnu-library/2.11/sp/libs
** R
** data
** demo
** inst
** preparing package for lazy loading
Error: package ‘sp’ is required by ‘maptools’ so will not be detached
* removing ‘/home/ssefick/R/x86_64-pc-linux-gnu-library/2.11/sp’
* restoring previous ‘/home/ssefick/R/x86_64-pc-linux-gnu-library/2.11/sp’

The downloaded packages are in
	‘/tmp/Rtmp3UTqA6/downloaded_packages’
Warning message:
In install.packages("sp", dep = TRUE) :
  installation of package 'sp' had non-zero exit status

-- 
Stephen Sefick
____________________________________
| Auburn University                                   |
| Department of Biological Sciences           |
| 331 Funchess Hall                                  |
| Auburn, Alabama                                   |
| 36849                                                    |
|___________________________________|
| sas0025 at auburn.edu                             |
| http://www.auburn.edu/~sas0025             |
|___________________________________|

Let's not spend our time and resources thinking about things that are
so little or so large that all they really do for us is puff us up and
make us feel like gods.  We are mammals, and have not exhausted the
annoying little problems of being mammals.

								-K. Mullis