[R] Combining several plots besides a dendrogram?

[Dylan Beaudette]

Hi,

The 'aqp' package originally used the subplot function to add images
to to a dendrogram plot. I have since changed to use base graphics
primitives, as the results tend to scale better. I avoided the use of
'layout' because sometimes it is convenient to add further
embellishments  that transcend panels in the figure. Have a look at
some of the code in this package, it is on R-Forge:

http://aqp.r-forge.r-project.org/

Cheers,
Dylan

On Fri, Jul 2, 2010 at 4:34 AM, Tal Galili <tal.galili at gmail.com> wrote:
> Hello all,
>
> I would like to recreate the plot shown here (from a useR 2009
> presentation):
> http://www.agrocampus-ouest.fr/math/useR-2009/abstracts/pdf/Hocking.pdf
>
> I downloaded the code for that image, and discovered that it relies on
> external web services, and also having PERL installed on the computer.
>
> I believe this could be done "locally" using the "seqLogo" function/package
> (see http://www.bioconductor.org/packages/2.2/bioc/html/seqLogo.html),
> combined with the subplot function (from the "TeachingDemos" package).
>
> So my questions are:
> 1) Might there be other packages/functions that I are more fitting for the
> task of recreating this plot ?
> 2) Can someone give some pointers on how the subplot function could be used
> to create such an image ? (I am not sure how to create such a
> layout, especially when it needs to be dynamic to the number of cluster
> choosen)
>
>
> Thanks in advance for any help,
> Best,
> Tal
>
>
>
>
>
>
>
> ----------------Contact
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