[R] Suppress output from getGEO
    Craig P. Pyrame 
    crappyr at gmail.com
       
    Fri Jan 29 16:04:38 CET 2010
    
    
  
Dear R-ers,
I am using getGEO to download expression data from the Gene Expression 
Omnibus. With default settings, when a file is downloaded and parsed, 
lots of dotted lines are printed in the terminal, like this:
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... .......... .......... ..........
.......... .......... ..........
downloaded 50.2 Mb
but many more!  I tried to suppress this rather unhelpful behavior with 
capture.output and sink, as below, but to no effect:
 > capture.output(getGEO(GEO=GEO)) # GEO is some GEO id
 > sink('/dev/null'); getGEO(GEO=GEO); sink()
Is this an issue with getGEO, or some underlying function? How can I 
avoid having the terminal spammed? Could the function responsible for 
this annoying output be modified to put an end to this?
Best regards,
Craig
    
    
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